GgaINT0004461 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:318346-318590:+
Coord C1 exon
chrUn_random:318346-318462
Coord A exon
chrUn_random:318463-318549
Coord C2 exon
chrUn_random:318550-318590
Length
87 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
AGGCTGGTGTCCCCACGCAGCCT
3' ss Score
4.16
Exon sequences
Seq C1 exon
GTGCCGGTGCAGATGGTGCTGGTGGTGCTGGCACTGTTGTCAGTGCCTGTCCTGCTCCTGGGGACACCCCTGTACTTGTACAAGCAGCGGCACAGGCGGAGGGCGAACTCAATCCCG
Seq A exon
GTGAGGCTGGGGATGAGGTTGAGGGTCTTGGCTGGTGTTGGGGGGGCACAACAGCATGGCCTGACCAAGGCTGGTGTCCCCACGCAG
Seq C2 exon
CCTGCAGCCACGGTGGAGCAGGAGCCACTGCTGGAAGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022624:ENSGALT00000036202:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(26.2=100)
A:
NA
C2:
PF0149614=V_ATPase_I=PD(6.9=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCTGGTGGTGCTG
R:
TGCCCTTCCAGCAGTGGC
Band lengths:
147-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]