RnoINT0148868 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219128510-219128883:-
Coord C1 exon
chr1:219128752-219128883
Coord A exon
chr1:219128618-219128751
Coord C2 exon
chr1:219128510-219128617
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTGATGTTATCTGTTCTCAGGAT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GTAGTGGTACAGTATGCGCTGGTGGTCCTGGCTTTGGCCACAGTTCCTATCCTGCTGCTGGGCACACCCTTGTACCTTCTGCGCCAGCACCACCGAAGAAACACTCAGAGAAGGCCTACAGCAGGCAGACAG
Seq A exon
GTAGGAGGAGGAAGGAGTACAGGGAAGGAAGGCTGAATGGGAAGTGACCTTTGCTTCCCTGTAGGCTCTGTGCTGCTAGGTGGGTAGCATGGGCTGTTCTAGGGGCTGGAGCTGTTGATGTTATCTGTTCTCAG
Seq C2 exon
GATGAGGACAGTGACAAGCTTCTGGCCTCCCCGGATGCTTCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCTCAGGAGATGAAGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTACAGTATGCGCTGGT
R:
GCTTCTTCATCTCCTGAGCTCC
Band lengths:
234-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]