HsaINT0165060 @ hg19
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]
Coordinates
chr11:67817130-67817533:+
Coord C1 exon
chr11:67817130-67817255
Coord A exon
chr11:67817256-67817428
Coord C2 exon
chr11:67817429-67817533
Length
173 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ACTGCCTGCTCATGCCCCAGGAG
3' ss Score
7.27
Exon sequences
Seq C1 exon
GAGGTGGTCCAGGCCACGCTGGTGGTCCTGGCCTTGGCCATGGTGCCCATCCTGCTGCTTGGCACACCCCTGCACCTGCTGCACCGCCACCGCCGCCGCCTGCGGAGGAGGCCCGCTGACCGACAG
Seq A exon
GTGGGACCGGGGCCTAAGGTGTGGGGGGCTGCTTGCGGGGAGAGGCCACTGTCCGGTGTGTCCCTGACTCCTCGCTTCCTGACAGACTCCTGAGTGGCCAGGAGCAGGCCTGGCGGGTGGTGGGGGACCTCCTGGGGCTGGAGTGCTGCCAACACTGCCTGCTCATGCCCCAG
Seq C2 exon
GAGGAAAACAAGGCCGGGTTGCTGGACCTGCCTGACGCATCTGTGAATGGCTGGAGCTCCGATGAGGAAAAGGCAGGGGGCCTGGATGATGAAGAGGAGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-TCIRG1:NM_006019:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTCCTGGCCTTGG
R:
TCGGCCTCCTCTTCATCATCC
Band lengths:
212-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)