BtaINT0146280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46221817-46222146:+
Coord C1 exon
chr29:46221817-46221942
Coord A exon
chr29:46221943-46222041
Coord C2 exon
chr29:46222042-46222146
Length
99 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
GCTAATGCTCCCACCTCCAGGAT
3' ss Score
8.29
Exon sequences
Seq C1 exon
GAGGTGGTGCAGTCCACCCTGGTGGTCCTGGCCCTGGCCACGGTGCCTGTGCTGCTGCTGGGCACTCCCCTGTTCCTGCGCCGGAGGCACCAGCGTCGCCAGTCTTCCCGGAGGCGGCAACCGCTG
Seq A exon
GTAGGGGCAGGGGAGGCGTGCGGGGTGGGTGCGGAGGGTCCCGTCCGGGCTGTGAGAGCCCACCCTGGCCCGTGGGTCTGCTAATGCTCCCACCTCCAG
Seq C2 exon
GATGAGGACAAGGCCGGGCTCCTGGGCCAGCCCGACGTGTCTGTGGCCAGTCAGAACTGTGATGAGGAGAAGGCCGGATGCCTCGGGGACCAAGAGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(10.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCCCCTGTTCCTGC
R:
CTCTTCCTCCTCTTGGTCCCC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]