DreINT0161361 @ danRer10
Intron Retention
Gene
ENSDARG00000105142 | tcirg1b
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3b [Source:ZFIN;Acc:ZDB-GENE-040426-2022]
Coordinates
chr14:16484177-16484900:-
Coord C1 exon
chr14:16484811-16484900
Coord A exon
chr14:16484298-16484810
Coord C2 exon
chr14:16484177-16484297
Length
513 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CATCATACATTATTTGAAAGGAG
3' ss Score
1.57
Exon sequences
Seq C1 exon
GAAGACAGACGTCCTCTTCTTGCAGAAAACGGCTCTATAAATTCACAACAAGGAGATGTGGATGCAAGAGGAGGAGGAGGAGAGGAGGAG
Seq A exon
GTGAGATGAAAAAAGGAGTTGTAGACTGTCAATTAGTTATTTTTAATGATCCGTTTAAACTTGATTTACAAGGAGTAAGACATTTACTCCTACACTACAGAAATTTCTTTAATTCACAACATGTCAGTGTTGCATTGCAAAAACTCACATTTTATTAAAGAAATTATGTAAAACGGTAAAAGTTCCCCTTATTTCACAAACCATCCATAAAAATGAACGGTATTTTTGAGACTTATTGGGAACTTACTTTCTTGCTTCTCTCATTTAGCACAAACCCAGATGTGTTCACACAGGGTTCCACTTAATTTTAATTAGTTACTGTATATACGTCTCTGTACATTAAAAATGGTCAGACTGTAAAATAAAATAAAAATTTAAAATAAAAAATTTCTTTAAAAAAATTTTTTTTCAGAAAATAACTGGCATTTTAGAAAATGTCAAATAAAGTAAAATAAAAAAATTCTAATTTGTGCAAACTTATGCTTTGTCTTTCCATCATACATTATTTGAAAG
Seq C2 exon
GAGTTTGATACAGCGAACGTCTTCATGCACCAGGCCATTCACACTATTGAGTATTGTCTTGGGTGTATCTCCAACACGGCCTCATACCTGCGGCTCTGGGCCCTCAGTCTGGCTCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105142:ENSDART00000170758:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGACGTCCTCTTCTTGCA
R:
GTGCATGAGCCAGACTGAGG
Band lengths:
208-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]