HsaINT0165061 @ hg19
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]
Coordinates
chr11:67817429-67817721:+
Coord C1 exon
chr11:67817429-67817533
Coord A exon
chr11:67817534-67817603
Coord C2 exon
chr11:67817604-67817721
Length
70 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCACTGCACCCGCCCCGCAGCTC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GAGGAAAACAAGGCCGGGTTGCTGGACCTGCCTGACGCATCTGTGAATGGCTGGAGCTCCGATGAGGAAAAGGCAGGGGGCCTGGATGATGAAGAGGAGGCCGAG
Seq A exon
GTGGGTGCAGTGCCTTCCTGGGGGTGGGACGGCTGAGGCCCTGCCGGCCCTCACTGCACCCGCCCCGCAG
Seq C2 exon
CTCGTCCCCTCCGAGGTGCTCATGCACCAGGCCATCCACACCATCGAGTTCTGCCTGGGCTGCGTCTCCAACACCGCCTCCTACCTGCGCCTGTGGGCCCTGAGCCTGGCCCACGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-TCIRG1:NM_006019:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.2=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(78.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGCATCTGTGAATGGCT
R:
ACAGGCGCAGGTAGGAGG
Band lengths:
168-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)