RnoINT0148869 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219128317-219128617:-
Coord C1 exon
chr1:219128510-219128617
Coord A exon
chr1:219128435-219128509
Coord C2 exon
chr1:219128317-219128434
Length
75 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CATGGTCTCTTACCGTGCAGTTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GATGAGGACAGTGACAAGCTTCTGGCCTCCCCGGATGCTTCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCTCAGGAGATGAAGAAGCTGAG
Seq A exon
GTGGGTGGTATAGTACTTTGTTGGGGGAGGGCTGCCAGTTCAGACCATGTTGTCTCATGGTCTCTTACCGTGCAG
Seq C2 exon
TTTGTCCCTTCGGAGATCTTCATGCACCAAGCCATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCTCATGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACAAGCTTCTGGCCTC
R:
GAGGCTGTGTTGGAGATGCAG
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]