BtaINT0146281 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46222042-46222338:+
Coord C1 exon
chr29:46222042-46222146
Coord A exon
chr29:46222147-46222220
Coord C2 exon
chr29:46222221-46222338
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ACTGCTGCTCGTTCCCCTAGTTT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GATGAGGACAAGGCCGGGCTCCTGGGCCAGCCCGACGTGTCTGTGGCCAGTCAGAACTGTGATGAGGAGAAGGCCGGATGCCTCGGGGACCAAGAGGAGGAAGAG
Seq A exon
GTGGGTGTGGGGACTCCCTGGGTGGCAGGAGGCTGGCGGCCTGGCTTGCCCCTCACTGCTGCTCGTTCCCCTAG
Seq C2 exon
TTTGTCCTGTCCGAGGTGTTCATGCACCAGGCCATCCACACCATCGAGTTCTGCCTCGGCTGCATCTCCAACACGGCCTCCTACTTGCGCCTCTGGGCCCTAAGCCTGGCCCACGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCTGTGGCCAGTCAGAA
R:
CCCAGAGGCGCAAGTAGGAG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]