DreINT0161359 @ danRer10
Intron Retention
Gene
ENSDARG00000105142 | tcirg1b
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3b [Source:ZFIN;Acc:ZDB-GENE-040426-2022]
Coordinates
chr14:16484980-16488608:-
Coord C1 exon
chr14:16488395-16488608
Coord A exon
chr14:16485094-16488394
Coord C2 exon
chr14:16484980-16485093
Length
3301 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCATGTATTTGTGTCTCTAGATG
3' ss Score
9.15
Exon sequences
Seq C1 exon
ACATTTCCGAGAGGTCAGCAGTGTGTTTCTGGTATTGATCCCGGAGTTGTGCTTTATGTTGTGTCTGTTTGGATACCTGATCTTCATGGTGATTTATAAGTGGCTGGTCTATGGTCCTGTGAATTCTGACTCTGCTCCCAGCATCCTCATCCACTTCATAGACATGTTCCTGTTTACTGAGAACAAGGATAACAAACCACTCTACACAGGCCAG
Seq A exon
GTGTGTGTGTGCAAGTGCATATCCTGATCTCATCTTTGCTTTAGCATCACAAAACTTTTGTGACTTAGAATGAAGTGTACATCTTAAATTCTTTATGGTTTATTCTTAAAAGTGACTTGGACTCCACTGATACATAGTTAAAACTGTTCTCTGATATCTACATAGAAGATACACTTAAAGCCACTTTATAAGGTACACCTGTCCAACTGCTTGTTAACGCAAGTTTCTAATCAGCCAATCACATGGCAGCAACTCAATGCATTTAGGGATGTAGACATGGTCAAGACGATCTGCTACAGTTGAAACAGAGCATCAGAAAGGGGGAGAAAGGTGATTTAAGTGACTTTGAATGGCATGGTTGTTGGTGCCAGATGGGCTGGTCTGAGTATTTCATAACTGCTGATCTACTGGTATTTTCACACACAACCATCTGTAGGGTTTACAGAGAATGGTCCAAAAAAGAGAAAATATCCAGTGAGTGGCAGTTCTGTGGGCACAAATGCCTTATTGATGCTCAAATAACCACTCGTTACAATCGGGGTATGCTGAAGAGCGCAACGCATTGAACCTTGAGGCAGATGAGCTACAGCACCAGACAACCACACCGGGTGCCACTCCTGTCAGCTAAATAGAGGAAACTGATACTACAATTCACACAGGCTTACCAGATTGGAAAAACGTTGCCTGGTCTCATGAGTCTCGATTTCTGCTGCGACATTCGGATGGTAGGGTCAGAATTTGGTGTCAACAACATGGAAGCATGTATTCATCCTGCCTTGTATCAACAGTTCAGGCTGCTGCTGGTGGTGTAATGATGTGGAAGATATTTTCTTGGCACACTTTGCACACCAAAGCTTACATAAGTATTGTTGCTGACCATGCTTATTGCTTTATGACCACAGTGTACCCATCTTCTGATGGCTACTACCAGCAGGATAACGTGCCATGTCATAAAGCGTGAATCATCTCAGACTGATTTCTTAAACATGACAATGAGTTCACTGTACTCAAATGGCCTCCACAGTGACCAGAACTCAATCCAATAGAGCACCTTTGGGAGATCATATCATGGACGTGCAGCCAACAAATCTCCAGCAACTGCATGATGCTATCATTTTAATATGGACCAAAATCTCTGAGGAATATTTCCAGTACCTTGTTGAATCTATCCCATGAAGAATTAAGGCAGATCTGAAGGCAAAAGGGGGTCCAACCCAGTACTTGCGAGGTGTACCTAATAAAGTGGCCAGTGAGTGTATGTAGCTCGGGTAAGTGCAAAAAATCTCCAGAAGTGGTTTTACATGTCTAGGTATTGCCTATGCAAATGATTTTACCTTACCTTGTAATGGTTAAGCAAAAATAATCATCTTTAGCTGTCAAAAAAAAAAAAAAAAAAAGACGCAAGAAGGCTAGGACCGAGTGAGCTACCTGTAAGCAACTCTATCCTGGTTTGCTAATGAGTTATGTGTTATTGATGTATTATAGGCTTAATTATAATTATACCTGGCAAAATAAACTGATATAGATGTATCTAGAGTTGTATTCAGTGGGCTTTTCATATATGTAAACATAGACAGGAATTAATGTCAGCATCAGCGTAAACAGATTTTCATCTTCCTGTCCAAATTGCCAAACTTTGTTTTATGAAGTTTATTGACATCCTTTTAGTCCAAAATAAGACACCATGCATAAACGTGCATTAAACCGTTTGCATCTGTTGCCTCATTACAAACAAGTTTCACAATATATACATTAAACTACCAAAAGATACAGTTAAACATAGCTTATTCCTTTTGCTGAAACTTATCTGTTTTAACTGTTTTTAGCATTCTGACAGCTGATGAGAGGCTCAGTACCTCAGAACTGCTGAATGCATGTCCCATTTTCCAAATAAGAGTCCCACACACATAGGATATATATGCTGGAACATAAGGAAACCATTTTAGTAATGTTGTTATTGCAATGGAAAATGTTGCGGCCAATCAAATGCTGCTGGGGGTGTGCATGTCAGTCATTTAGAGTGTTTCGTACTAGACAGTGTACGTAATGGACAACAATGTACAGTGGTTCCCACACATAGACTTTTCCTGGGTGGGCCACACAGATATATTAACGGCCACCCAACAATATTTAGTGACACTTTTTTTTTTTTTTTTTTTTTACCATTATTATCATCCTTTTACACTTTTTTTATTATATATTTTTTTTTGTATCTGCCCAATATAACCAAACATCCACGATCAAAATCCACGAGTGGAAAATCTTCTCTCATTTACTCATTTAGATCAGTGTGTGGAAGACCTATCACTACTCTCACAAACAGTCTCGCATGCTCTGCTGACCCACAGAGATGCGCCTTGGGACTCAAAAATTAATCTGGCCAGGTTTTCTAACTGCTAAAATGTCCAGAATTTGACTTTTGCTTTTGCTTTCTAATGCTGTTGTTAATTGTATGCGTTTTTGCATTACCTTTTTATTTAAGCCTACTTTCGCTTGGCTTCGCTGCTGACGAGTTACAAGCTCGAGAAACAATAAATAATTAATTCTTTAATCTAAACAACTCAGAGAAACTGTACTATATACTCAGAGAGGATAAAATGACTGGTCTAAACTTGCTGCAAAATATATGTACATCATTAGTCATCGTTAATCAAAGCATTTGCCTTATTTAAATAATCATTGTATAATCCTTGTATAAAAGATTTAAAGTAATCTTGTAATTATTATAATGTTTAGAGAAATTGACTGATTTTATTCCTTTTTCTCTTTATTATTCATTTGCTGTATTTTTTTTATTTTTATGATGTTAATATTTTACATAGTCTTTATTTATATACAAATCTAAAATGCTTAGGCATTCAAGCTTGCTTTGAGCTTAAAAGAGAGATAGAAGCAGATTTAACCTGTTAGTGGCTGCACATGGCTCCTGAATAGTAAAAAAAGTAAGATAAATAGTGGACTTTTTTAACTTTAACCCATTCAAAAGAAACAATGTATAAAAGTGTCATAATAATAATCAAAATTATTGCTAAAAATTAAGTTATGTTTTGGTTGTCGCTTATAGTTATCTATTTATCTAATCTGGGTAAATGGTGTGTTTCGATCCGGGTACCAAACCTGTGGGAAGCACTGATGTATATCCTGTTTTTTGTTGTACAATAGTGATGTTGGTTTATTTGCATCTTGAATGTCCGGAATGTAATACTTAAGCATTTTCCTCAAGACTTCATGTCTCCTTCAAATTATTTAGCCCAATCAGCAAAAAAAATGATAAAGTCAACCCATGTATTTGTGTCTCTAG
Seq C2 exon
ATGACTGTGCAGAAGGTTCTAGTGTTTGTGGCGGTGTTGTCTGTTCCTGTGCTGCTATTGGGGAAGCCGATACAAGAATACCTCTCACATAAGAGGAAGAGAAGAAATCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105142:ENSDART00000170758:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.2=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]