HsaINT0165059 @ hg38
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68049081-68049788:+
Coord C1 exon
chr11:68049081-68049294
Coord A exon
chr11:68049295-68049662
Coord C2 exon
chr11:68049663-68049788
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCTCGCCCTCTCCCTGGCAGGAG
3' ss Score
10.27
Exon sequences
Seq C1 exon
GCACTTTGGCCAGAGGCACCGGCTGCTGCTGGAGACGCTGCCGGAGCTCACCTTCCTGCTGGGACTCTTCGGTTACCTCGTGTTCCTAGTCATCTACAAGTGGCTGTGTGTCTGGGCTGCCAGGGCCGCCTCGGCCCCCAGCATCCTCATCCACTTCATCAACATGTTCCTCTTCTCCCACAGCCCCAGCAACAGGCTGCTCTACCCCCGGCAG
Seq A exon
GTGGGCTGCGGCTGGTGGGGGCCGGGCTCACACGGCCTCATGGGGACCCCGCGGTCACAGGGCCACTGGGAGCTGCAAGATCCTCGTCCGAGAAACGGGGATGCAGGCCCCGGGCCGTGCAGACAGGGCCGTCAGAGGTGATGGTGTGCATCTTTAGCAGGTGGCACAACTGGCACTGGGAACCGGGGGTCCCTTCCCTCAGGAGTCCTTATGGAGGCAGACCCTCACCCAGTGAGGGCACGGAGCCCCCGGGGGCCCTGGAGGGAGGAGCGACCGCAGGCTCTCTGGGCCCCGTGACTGCTGTGACTCAGGTTCCTTTGCAGGTGTGCACAGCAGGGACGCCCTGACTCTCGCCCTCTCCCTGGCAG
Seq C2 exon
GAGGTGGTCCAGGCCACGCTGGTGGTCCTGGCCTTGGCCATGGTGCCCATCCTGCTGCTTGGCACACCCCTGCACCTGCTGCACCGCCACCGCCGCCGCCTGCGGAGGAGGCCCGCTGACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719:ENST00000265686:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(11.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGGAGACGCTG
R:
AGCAGGTGCAGGGGTGTG
Band lengths:
272-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains