BtaINT0146279 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46221299-46221942:+
Coord C1 exon
chr29:46221299-46221512
Coord A exon
chr29:46221513-46221816
Coord C2 exon
chr29:46221817-46221942
Length
304 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTCCCGCCCCTCCCTCGCAGGAG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCACTTCGGCCAGTGGCACCGGCTGCTGCTGGAGACCCTCCCCGAGCTGGTCTTCCTGCTGGGGCTGTTCGGCTACCTGGTCTTCCTGGTCGTCTACAAGTGGCTGAGCTTCACGGCCGCCAGCGCTGCCACAGCCCCCAGCATCCTGATCCACTTCATCAACATGTTCCTCTTCTCGCGCAGCCGCACCAACAAGCCGCTCTTCCAGGGGCAG
Seq A exon
GTGGGCGGGGCCTTGGGCAGGGCCAGGTGGGCCCACTCCCACCACGGGGCCCCGCCCCTTGGCTTCAGGATCCTGATCTGGAAAGTGGGATGCAGACCTGAGGCCGTGAGACGAGGAGGGAGGTCCAAGGACCAGCAGAGATGGTCCAGCGGAAGGGGTGCTGGAAGCCTAGGGTGCCACCCTCCCAGAACTCCGTGTGGGGTGGCGTCCCTGCTCCGTGAGGGGCCCCGGCGGAGAAGTGGGGGGCAGGCTCCCTGGGCCCCGGGAGCTGCGTGGCGCCCTGACTCCCGCCCCTCCCTCGCAG
Seq C2 exon
GAGGTGGTGCAGTCCACCCTGGTGGTCCTGGCCCTGGCCACGGTGCCTGTGCTGCTGCTGGGCACTCCCCTGTTCCTGCGCCGGAGGCACCAGCGTCGCCAGTCTTCCCGGAGGCGGCAACCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(17.5=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTGGAGACCCTC
R:
CTCCGGGAAGACTGGCGA
Band lengths:
306-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]