HsaINT0165059 @ hg19
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]
Coordinates
chr11:67816548-67817255:+
Coord C1 exon
chr11:67816548-67816761
Coord A exon
chr11:67816762-67817129
Coord C2 exon
chr11:67817130-67817255
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCTCGCCCTCTCCCTGGCAGGAG
3' ss Score
10.27
Exon sequences
Seq C1 exon
GCACTTTGGCCAGAGGCACCGGCTGCTGCTGGAGACGCTGCCGGAGCTCACCTTCCTGCTGGGACTCTTCGGTTACCTCGTGTTCCTAGTCATCTACAAGTGGCTGTGTGTCTGGGCTGCCAGGGCCGCCTCGGCCCCCAGCATCCTCATCCACTTCATCAACATGTTCCTCTTCTCCCACAGCCCCAGCAACAGGCTGCTCTACCCCCGGCAG
Seq A exon
GTGGGCTGCGGCTGGTGGGGGCCGGGCTCACACGGCCTCATGGGGACCCCGCGGTCACAGGGCCACTGGGAGCTGCAAGATCCTCGTCCGAGAAACGGGGATGCAGGCCCCGGGCCGTGCAGACAGGGCCGTCAGAGGTGATGGTGTGCATCTTTAGCAGGTGGCACAACTGGCACTGGGAACCGGGGGTCCCTTCCCTCAGGAGTCCTTATGGAGGCAGACCCTCACCCAGTGAGGGCACGGAGCCCCCGGGGGCCCTGGAGGGAGGAGCGACCGCAGGCTCTCTGGGCCCCGTGACTGCTGTGACTCAGGTTCCTTTGCAGGTGTGCACAGCAGGGACGCCCTGACTCTCGCCCTCTCCCTGGCAG
Seq C2 exon
GAGGTGGTCCAGGCCACGCTGGTGGTCCTGGCCTTGGCCATGGTGCCCATCCTGCTGCTTGGCACACCCCTGCACCTGCTGCACCGCCACCGCCGCCGCCTGCGGAGGAGGCCCGCTGACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-TCIRG1:NM_006019:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(11.6=100),PF102474=Romo1=PD(50.0=40.3)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGGAGACGCTG
R:
AGCAGGTGCAGGGGTGTG
Band lengths:
272-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)