GgaINT0004612 @ galGal3
Intron Retention
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10836907-10837617:+
Coord C1 exon
chrUn_random:10836907-10837090
Coord A exon
chrUn_random:10837091-10837461
Coord C2 exon
chrUn_random:10837462-10837617
Length
371 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
3' ss Seq
GCACCTCTTGTGTTTGTGAGGTT
3' ss Score
2.63
Exon sequences
Seq C1 exon
GGACGGGCACCAACGCCTGCTACATGGAGGAGATGAGGCACATCGACCTGGTGGAGGGGGACGAGGGCCGGATGTGCATCAACATGGAGTGGGGCGCCTTCGGGGACGACGGCGCGCTCAACGACATCAGGACCGAGTTCGACCATGAGATAGACATGGGCTCGCTCAACCCCGGCAAGCAGCT
Seq A exon
GTAAGCAGATTCCTGGCACCGGCTCGGCCGTGGGCTCCGCTCCGCATTGCCCATCCTCCCATTGTGTGGGACCGGTGGGGTTGTCCCAGTTAACTGGGTCACAGTGTCCTCTGTCCCGCCAACGGGGACCGCATGGGATTTGGGCTGGCATGTCCACCCAACGCCCGCTTCCCTCGCCAGCCCTCCGCTCAGGGCTGTCGGTCTGCGTTTCCCCTGCCAACAAATCCATCGGCAGCAGAAAGGGAACACCACCACCTAATGTCCACAGCCAGGTCCTACAGAATTCCTGTTCCGCAGAGGGGACGGTGCGGCTGGGAGAGCGGTTGGGGTTAATGGTGGGGGTCCAACCACGCACCTCTTGTGTTTGTGAG
Seq C2 exon
GTTCGAGAAGATGATCAGCGGGATGTACATGGGCGAGCTGGTGCGCCTCATCCTGGTGAAGATGGCCAAGGAGGGGCTCCTCTTCCAAGGGAAGCTCTCTTCGGATCTGCGCACCACCGGACACTTCGAGACCAGATTTGTCTCCGCTATTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754:ENSGALT00000036098:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAACGCCTGCTACAT
R:
TTCTCAATAGCGGAGACAAATCTGG
Band lengths:
334-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]