GgaINT0006036 @ galGal4
Intron Retention
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5562023-5566866:-
Coord C1 exon
chr15:5566788-5566866
Coord A exon
chr15:5562070-5566787
Coord C2 exon
chr15:5562023-5562069
Length
4718 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
GCTTTCTTTCCTAATTATAGAAT
3' ss Score
7.56
Exon sequences
Seq C1 exon
ATTTTACTTTTGAGTATGTGCAAAGAGAAGCTCTCAGAGTTCCACTTATCTTCAGAAATAAGGATGGACTGGGAATTAA
Seq A exon
GTAAGTTACCACCAAATATTGATTAAGAAATGCTTTTATAAAACCACCATTATGCTTTGCTGGTATTTATGATGGTTATTCTAATGATCTCAAAAGGTGTTGCAGTTAGTCAGTCTGTCAGCATCCTTGAGAAGGAGAGTGATTTTTTTCTACTTAAAAACAAACAGATAATGAGTTCTATAAAACTAAAGTGCATCTAGTGCTGTTCTATGCAATCAAAAAATAAATCAGTGATAAATGTAGAAATAAAATTCAAATGTTCTTGCTTCCAGTCAGTGCTGCAAAGACAGAACAACCACCCTTCAGTTTTTGACTTCTCAACCATTTTGTGCATTATAGATGGAAAGTCTAATGTTGCTTGTCTTTCTCCTTGATAATTTTATCTCTTCAGAGTGTCACTAATTTGTAAATATTTAAAATATTTAAAATTAGAGTCTTTTTGAGTATGCATTTTCTTAGTATCCTGTGATAAAGGATTTGGTATTTTAATAAGCAAATTCTACAAGTCATTTTTAATAAATGCAGTGGTGTTGAAGAGAGTATGGAGCAGAAATGCTAAGTCATGGCTTGAAGCACTGATGGAGCACCTGGTAGGAAGGCAGGGCCAACCCAGAGGAGCTCAGGTGCATGCAATGTGCCTGAGTGATTGGAAGGGGTGGAGCCAGGATCCAGGCCTTCCCAGCCCTCATTTAAGGGTTGGTAGTGGAGGTGAGGGTATCTCTCTGGAGATCCTTGTCTTATGGAGGCCTTCCAAAGGTAAGCAGGCTGTTGTTTTTGTGTCCATGGCTGCTGCATTTGGGCTTATCCTCACTTTCTCCAGCCTAGGACTTTTTTTTGTTATTATTGCTGTGCTTTCTGTTGTATTACATCACATTATAGTGTTACAGAGTAATACTAAAAGGTTATGCTATAGATTGTGTGACTGATAAAATATAACCTCTTTTGATATTTTTGGATACTTTAACTATATAACTGATCATATCTGAATGATAGAAAATTTATTTTATGGAAGAACTATTACTTTACCTAACTTCGGCTGAGCATCCCACAGTTTAATGCTGTGAGTTATTAAATAATTGGGTATTAACAAAGCCAAGCTGCCAGTGTATAACTTAAGGGGAGGCCAGATTACAGGTCTGTTTTGCTGAGACCCAAAAATGGCCTTGCTCAAATGCTTGTGTGTATGCACATACACAGCATGTATCAGTAATCAGAGAAGACCACTGAAAGTAAGCTACCTTTTTTAGGTAATTATTATCAAGTAAGTTCAGTAAATAGCACTTCTAATACACAGATTGGACATGAAGAACTAACAAAACCAAGCATAGCGTTACTCTTCATTTTCAGTTGGCTTTTTGGAGATTTGGCAGTTAAAATAAGTTTTTTTTACTTCAAAACTGGATTGTGAGGAGGTAGAAGAGGAATAAATACTAATCCACAGTAATAGTTTTGGAGTCACTTTCCTGATTCTTTTGTATGCGAATGCCTTGAGCGATGAAGGAGAGTGAGTGGTGAAGGAGAATAAGTGCTTCATTTTGTTGTGATGAGCTTAAAATATCCTCAGCAGCCAGGCTTGACTAGCCAGTGTTTCTGTTTCCTGCCAACCACTGGTATCATTCTAATACTGGAGATGGAATTCACCACCAAAGAAGAAAGAGCATAGAATCCATATCACTAGTCTCCATATCACTAGTCTCCATATCTTGATCAGTTAGTATGCTGATAAAAGTAAGAGCAAATTGATCTGATACATGAGCTTTGAATGGATCCTGCATGGATTCAGTGGAATTGTCCATTTCACCATAATGGAAATGTAAAGCCATTTCACAGTCAGTTGGGTGAATTGGTTTTATATTTCCATTCTCTTCTGAATCATTGACTGCTGTGGAGGATTAAAATGTTAGAATTTGTAGATCAGTAATCTGTTAGTACATCTCATATTCTATTTTTTTTCTGAAATGAGCATGAGTTATTAGTTTGGAATGATATTGTGAAGGAATTTCACGTAGTTGGGTATAAATGCCACAAGAGTGAGAGGAGGTTGGAGACATGATGTATGTGTATTTTAATCATAGAAGTGAAATGCATGAGCAGTATTTCCTATTTGACACTGTGCAAGATAACACAGTATAATTTTATTTACTGTTTCACTTCTTACATGCCTCATTGAGGGTGGCTGGCATGCAGTACGTACCTTTTGTGGATGCGTAGATATAGAAGGACTCTGTGCATTGTATTCCAGTGAGATCAAAATAGTATTGACACTTGCCTAACTGATTTTTAAATATCTAGTCTCCTTATCCTGACATCTGCTGCTTGAAATAATGATTGTTGTAGCATACTACCTAATGTCAGTAGAGTGAGATGGGCCAATTTGCCTTTAGATTTGGGTCATTTGCTGATGATGTTCAGGAAACTTCTATATTCCTCTTCAGCCTCTGGAGAAAGCCATGCTTTTTTGGTCCTTTCCAGCAATACTGTCTCCTGTCCGTGGCAGGCTATATTTATCATTTATGGGCCACCTAATCTAATGTATACATGTAGGGTGACTTTTGAGATGCAGTAGTCTATAAAATACACAACATGAGAATTTCCACACTTCTGTTTGATGTTAAGCAGTCAGCTTGCATGTCTGTGGCTGGCAGATGTACAAAGCATAGCTGAACAGTCTGGTGACTGACTGGGGATACTCTAAAACATTGAGAAATAAGATGAATGAGAAAAAAATTATAACTGAACTTTGAAAATTGATTTCATGTGTATTTCTGATCATCGTGAGCTGTTACTTCTATAGCTAGAAGCAGAAAGATCCACCTGTGACCCATTAGCAGAAGGTAATCTCGTTTTCGTAGAGTTGTTTGATCATTCCTATTACTGTATCTTGGAGAGAGAATGCTGCTTGGAAATGTTGTCTCTCGTCTGAATGTAGAGCAGTAGCAAAGCAGCCCTAATTGTATAGGAGTGACTGTGGCAGTTATGCTGAGTGAGGATGGAGTAACAGTAATTTACAGTCTCAGCAGCAAGCAGAACAGGCTTGATTTAAAACTGGACCTCCCAAGGTGTGACTCAGCTACAGTATGGGTTCTTATAGTTGAAACCTGCTGTGTTCAAGCCTGAAGTTCTTCTCTTGGTGTACTCTTTGTACGACACATCCTGAGGATACAGAGGAAAAACAAGGATATGCCAGGTGTGCTCTCCAAACAGCTATTAATTTTATTTTTCTGGTTTGAGTAAAGTTGATTTTCAGCTGTTGCTGGAGTGCTCGGAAAGAGTGGGTTTGCTTGCATGCATCTGCATTAGGGCTGTTCTCTGCTTTGGCTGTTGAATTTATTTTGATTTCTGCAAATCTGAAGAATATTGCTCATCTCTGCGCCTGACATAAAGCAAAGACAAACTTTGGCACTTGAACATAAGCCTTGCTTAGTCTTATTGCCTCCAAATAGTTCCCCCTTCCATGCTTCTGACTTCTTAAAGCTTGGATATTAAGATGAGCTTTGATTCAGGCTGCTTCGTTCTGGCAAGGGAGTGAATTCCAAAGCTGTTGGGCCCTCATCAGTAAATGCAGAGATGTGAGAGTTGGCAGCAACCTAACAAAAGATATTGTTCAGCCTCCTCATTCCACCGGAGGAAGGTGATAAGGGTGAAGTGAGTGAACAAACAAGTTATGGCAAATAGCTCTGAAGATGCACACGTGACACTAAGTGCGTTTTTCTAACTGTACCTTTTGGTGTTTTCTTAATATAAGAACTCTGAAACTTTGTATGTTGGCTGTATACTTACGATTTCTAACTGAATTGTGTCAAAAGCACTATATCAGAAGCAAATTCTTTATTTTCTACCCATGGCAGTGGGATAGAGCTCCTAACTGGTAGTCCCTACAGTGCTGGTTTTCAGCACAATTCCTTCCTCAGTCTTGTGCTATATGAAGATGTGAAGTGTGAAGTAATTTCATTAAGATGAAGTCAATCAACTTAAACCCCATTACTGTTTTTGTTTTCTTTTTCCATCCAGTCAGTGAATTGCAGATTTTACTCTCTCCTAACACTTAAAACTCACTCTATGTATATTAAACACTTAAGATATAAGTGATCTTATAGATGTGTCAACAACTGTGAACCAATTATGAAATCATTTATCTCTCAATTAGCCTAAATTGAATTGAACAGCTACTTCCGTACCCATCAGATATGTCTGGGTTGTCTTCTGCCAGGTGAGGAGGTTTGGAATAGCCTTTAAAACAAAGGGGCTTATTTGTTATTTTTGGTTCTTTATTTCTAAACTGAGAATCCAGCCTATGATGATGTGACATTGAACAACTTACTTTATTCTTCTCTGCCTCAATTTGTGTCCACTGCAGAAACTTGAGAATATACACAGTGAGTTGCCTAGCAGAAATGAGCTATGAAGGTTTGGAATTTCATTGAAATTACTTCCAGCCCCTTCCCTTTTCTCCCACTCCAGTGCCGCTAGAGAGTGCTTGAAAAGATGCCTCTTCTGGTTTGTTATGAGCAGAGGAACTTTTATATGCTTGCCAATGTGAGGGTGCTGTGTGCTATTAGTACTTGCACTGTCTTGCACATGCTTCAGAGAGGCCTTGCTTGGTTCTACCTACTGCATTATGGACAAAGGCCACTATATATTCTCTTTTATTATGATAACAAAAGTGTACTTATACTTACCCTGATGGTATTTAACATTGCTTTCTTTCCTAATTATAG
Seq C2 exon
AATGCCTGACCCGGATTTCACCGTCAGAGATGTGAAGCTATTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225:ENSGALT00000006725:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(8.4=100)
A:
NA
C2:
PF136211=Cupin_8=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]