HsaINT0085028 @ hg19
Intron Retention
Gene
ENSG00000089094 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:13610]
Coordinates
chr12:122012452-122013764:-
Coord C1 exon
chr12:122013686-122013764
Coord A exon
chr12:122012499-122013685
Coord C2 exon
chr12:122012452-122012498
Length
1187 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
CTGTGCTCCTCTTTCCCCAGGAT
3' ss Score
11.61
Exon sequences
Seq C1 exon
ATTTCAACTATGAGTACGTACAGAGAGAAGCTCTCAGGGTTCCCCTGATATTTCGAGAAAAGGATGGACTGGGAATTAA
Seq A exon
GTAAGTTGCTGAAACTAATCACTCCTTCCCCCGTCTTCCTCCCTAACATACTTTATAGCTTGGGATGGATTTCTTCCACCCTCTTCCCACCTCTCATCACTGAGAAGGATCTTTTTTCACGATCTGGGAACAGCATCTCCTTGTTCAAGGCCTGACAAAGGGGAAACACTCTCCAAAGACTGGTCTTTTGCAGGGACTTTGGGCAGAGAGAGGACATAGGGTAATTAAGCAGTGTTGACTTTTTTCCCTGACCCACCCCAGTTACACTCAGTGACCTCCTACAGAGAATTGTACCTCTCCTCCTTCCCCTTGCTCCAGATCAGGAGACTGAGGCAGAGCCTGAGCTGCAAAGAGACTAGCCAGCCTCTAAGCCCAGACCCAGGGCACCTAGATACATGTTTCTTATGCAGATTCCTGGGGTGCCAATGTCTCCCCTTTCTTTGCCTGCCCTGCAGCTTGCCCCTCCACTATGTCTGTTTTCATTCACTGAGATCTGTCAGAGCTCCAGGTTGGGGGAGAGGTCTGGGAGGCAGGCTGGAAGAACAGGTTTGTGCCCCTTGGGCAGGGGCAGGGGAGGAGGCTTGGGGTGTCGTCCCAGGCAGCCTCTCTCCAGCATCTGCTCCCAGACTTGCTCAAGAGTCCATCCCTGTGAGTAGGATTTAAACCTTGGGCATCATTGTTAATTAATAGTGAATTGTAGCCCATATTACCACATCCCTGGAACTAGTACAATGCGTGTCTTTTTTTCCCTCTGAACTTAAAGGGGTCCGTCCCACTTTGCATAAAACTCCTCATGGAGAGTATTTTCTAGAGGGAGAAAGAGACATAGAGAGGGCTACCCACCCTAAAAGAAAGCAGGCATTTGAATGTCTAGCTCTGGCCCTTACCTTTGACCCCACACTTCCAGCTTCCCTGGAAAAATGGGGTGGACAGTGGATGTCCTACCCTCTGCTGAGGTTCAGGTTTGAGTTGCCTCTTGGGGTAGGGAAGGGCCTCAGTGGTTCTGGGGTGACCCTCCCTGGAGGCATCAACTGGTCTACTTCTCTCCCTCTGGATGTTCTCATTTTGAGTTCCCAAACTGAGGGGAAAGGATCTCTCTTGGAAAAATGGCTTCCCCCCGGGCCCAGGGTAGTCTAGCTCTGTTGTTTCTGGCCTCTCACCAAAGGTCTGTGCTCCTCTTTCCCCAG
Seq C2 exon
GATGCCTGACCCTGATTTCACAGTCCGAGACGTCAAACTCCTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089094-KDM2B:NM_032590:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(11.6=100)
A:
NA
C2:
PF136211=Cupin_8=PU(2.5=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)