GgaINT0006277 @ galGal3
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11516675-11516921:-
Coord C1 exon
chr15:11516866-11516921
Coord A exon
chr15:11516789-11516865
Coord C2 exon
chr15:11516675-11516788
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CGGGAGTCCTCTGCCCACAGAAC
3' ss Score
6.58
Exon sequences
Seq C1 exon
TCTGGCTCCAGCGATCCCTACTGCGTGGTCAAGGTGGACAATGAGGTGGTGGCCAG
Seq A exon
GTAGGTGAGCATGCCACCACCACGGGAAGAGGGCACAGGGTCCAGATGGAGTGCCCACGGGAGTCCTCTGCCCACAG
Seq C2 exon
AACAGCCACGGTGTGGAGAAGCCTGAACCCATTTTGGGGTGAGGAGTTCACCCTGCGCCTGCCCGGCGGCTTCCACAGCCTCACCATCTACGTGCTGGATGAAGACACCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(27.3=94.7)
A:
NA
C2:
PF0016825=C2=FE(57.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTCCAGCGATCCCTA
R:
ATGGTGTCTTCATCCAGCACG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]