GgaINT0006277 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11198173-11198420:-
Coord C1 exon
chr15:11198364-11198420
Coord A exon
chr15:11198287-11198363
Coord C2 exon
chr15:11198173-11198286
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CGGGAGTCCTCTGCCCACAGAAC
3' ss Score
6.58
Exon sequences
Seq C1 exon
CTCTGGCTCCAGCGATCCCTACTGCGTGGTCAAGGTGGACAATGAGGTGGTGGCCAG
Seq A exon
GTAGGTGAGCATGCCACCACCACGGGAAGAGGGCACAGGGTCCAGATGGAGTGCCCACGGGAGTCCTCTGCCCACAG
Seq C2 exon
AACAGCCACGGTGTGGAGAAGCCTGAACCCATTTTGGGGTGAGGAGTTCACCCTGCGCCTGCCCGGCGGCTTCCACAGCCTCACCATCTACGTGCTGGATGAAGACACCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
NA
C2:
PF0016825=C2=FE(46.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCTCCAGCGATCCCTA
R:
ATGGTGTCTTCATCCAGCACG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]