RnoINT0124491 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41442523-41444664:-
Coord C1 exon
chr12:41444608-41444664
Coord A exon
chr12:41442637-41444607
Coord C2 exon
chr12:41442523-41442636
Length
1971 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GCCTAGCACCCCTCTTGCAGGAC
3' ss Score
7.29
Exon sequences
Seq C1 exon
GTCTGGGAGCAGTGACCCCTACTGTCTTGTGAAAGTGGATGATGAGGTGGTGGCCAG
Seq A exon
GTATGTAGTCAGTACCGGGTAGGGAGAGGAAGGGACCCAGGAAGGAGGGCCAGTGCTTTCCAGGGAGCAGAGAATGCAGCCCCTCCTGAGGGGGTGTGTCATTCAGGCTTCAAGGGAACTGCTTGTGTCCTGGCCTCTTGTGTATTGCCCACTGGGGCAGATGCTAACTGGCCAGTATCTTCTGTCTGGGGACCAATGATATCACTGTGGCTCCCTGGGGCTGACTCAGCCACCACCAGGCTGTGCCTTCCCAGAGGCCTCTGGGTGGGGGTTTGGGGGGGCCATCTCATGGTTGACTGGCTCCCGGTCTCCGGGTGCTGCGGGTGCCCAGTGCCTGGGTGTGTTGTATTCGCACCAATGTTCAAGTGGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCCGTGCGTACCAGCCTGCCCATCTCGGGTGGCACAGAGCTGGTGTGAATGCTTCTGCCCATGTGTGAGCGCTCATGTGGGTGTGCAGGCCCACAGGACTCCTGTGGGTACCAGAGCGGGGAAGGTGTGAATGCAAGGGAGGGTATGTGGATGTCTGTGGGCGCTCAGTCTGGATGGCACATCAGCTGAGCTGGGCTTCTGCCCCCGCAGGTGAAGGGACAGCTCTCAGCCCCCGCAGACCTGAGGGGGTGGGTGGGCGGGTGGCTGAAGCCTTGGTTTCTATGGAGACGGCAGGATTCAGGATGCTCCTGGCACTAGTTCTGGTCCAGATGGGCTGGGAGTTGGGGGTGGGGATCCCCCAGGGAAGGCTGACCCCTCCCTTGGCTCCCTCTGTGTTGCCCTATTATAAGATACTAACCTTCAAGCCTCAAACTGGCTTTCTTTATGCCTTCAGGCAGACATTCTCCCTTCCCTGGGCTGCAAGGAAGAAACAGAAGAAAACAAGCTTTGTACACTTGGGTTTGACTGGGGTGTCACTGGGCAAAGTAGAGTCTCTATTCCCAGGAGCAGCCATGATGGGAGACATATCAGTGCTAGACCTAGTCGTTGGGCATATGTATATGTACCTGACTGGCTTTGGCTTAATCCTAGCATCCCCTGACTTTCTGGGTACTATGAAGCCCTGCGTGCTCTGTGACCATTGTCGGTTCCACCGTGACCTGGCTTTGCTCACACATGCCTGCCCCAGGGCCTTCACACATGCTGTTCCAGCCATCTGGGATGCTTGTCTTTCCCGCCCAGTTCTCTTTTTGCCTGACCGAACTGAGTGAGAAGCCCTCTCCTATTCCCAGCCCCAGCCCCAGCCCCACCCCCAGCCAGGCATCGCTGAGCTCACCCCAATCACAGACGATGTCTACAGTCTGGGTGGCGCGTAGGGAAGGGCATGAATGAGTGGGCCACTAGGTATTGGTGACTTGTTTCAGACTCGTGTCTATCTGGGATACTGTATAAACAATTTCTAGATCCTTCTGAGGATGCATGTGCGTATGCCTGTGTATGTGTGAGTGTGACTTCCTGTGTCTCTGGCTTCCTAGGCGTATCTGGGTGTGTTTCTCTAGTTGTGTGTAGTTGGGTCTCTCTCTGTGTATTTTGGTTGACTTGAGAACCTCTTTATTTTTTATTTTTTATTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCTCAGCCCCGAGAACCTCTTTAGTTGGGGATGTATGCATGCATGCGTGTGTGTGTGTGTGTGTGCGCACGTGTGTGTGTGTGCGTGTCTGCAGTGAGTCTGGGTGTGCTTCTCTGTCTAGGCTTACAAGTCTTAGTGCATTTGCTCTATTCCTGGGATGGGGGCATGTGCACACACTAGTGTGTGTGTGACCGTGTCTGTCCTCCTGTGTGTCCATAGCTGCATTTGTGGGGAATCCCCAGGTCGCCCACCATTTGAGGCCCTAGCCTAGCACCCCTCTTGCAG
Seq C2 exon
GACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAGTACACTGTTCACCTTCCACTGGACTTCCACCACCTGGCCTTCTACGTGCTGGATGAGGATACTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(23.2=100)
A:
NA
C2:
PF0016825=C2=FE(46.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]