GgaINT0006822 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7348606-7349725:+
Coord C1 exon
chr15:7348606-7348800
Coord A exon
chr15:7348801-7349583
Coord C2 exon
chr15:7349584-7349725
Length
783 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
NNNNNNNNNNNNNNNNNNTGCAG
3' ss Score
0
Exon sequences
Seq C1 exon
CCTTTGAGCGGGGCCACTGCTACGAACCCTACATCCAGAACGGGAACTTCACCACCTCCGACCCCACCTACAACCTGGGCACCACCGTGGAGTTCACGTGCGACCCCGGGCATTCCTTGGAGCAGGGCCCCGCTGTCATCGAGTGTGTCAACATGCGGGACCCCTACTGGAACGACACGGAGCCTCTGTGCCGAG
Seq A exon
GTCAGTGCCCGCACCATGGGGCCGTGCCATGCTCTGGTGCAGGAGGCCTGCAGCCGCTGCCTCTCTGCTGCAGCCACGTGCGGGGGGGAGCTGACAGCCATGGCCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
Seq C2 exon
CAGCCACGTGCGGGGGGGAGCTGACAGCCATGGCCGGGGTGATCCTGTCCCCCAACTGGCCGGAGCCCTACACGGAGGGTGAGGATTGTATCTGGAGAGTCCACGTGGGTGAGGAGAAGCGGCTGTTTCTGGACATCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
PF0043115=CUB=PU(40.4=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGCGGGGCCACTG
R:
ATGTCCAGAAACAGCCGCTTC
Band lengths:
330-1113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]