BtaINT0131738 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68264822-68267146:+
Coord C1 exon
chr17:68264822-68265016
Coord A exon
chr17:68265017-68267007
Coord C2 exon
chr17:68267008-68267146
Length
1991 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTGTCTGTGTCTTTTACAGCCA
3' ss Score
12.36
Exon sequences
Seq C1 exon
CCTTTGAGAAAGGCCACTGCTACGAGCCCTACATTCAGAACGGGAACTTCACCACGTCCGACCCGACCTATAACATCGGGACCATAGTGGAGTTTACCTGTGACCCTGGCCACTCTCTGGAGCAGGGCCCGGCCATCATTGAGTGCATCAACGTGCGAGACCCGTACTGGAATGACACAGAGCCCCTGTGCAGAG
Seq A exon
GTGAGTGGGTCACAGCCCTCCCTCCAGGGTGTCCCAGGGCCCTCTACTCCTTCAGATGAAGAGATCCAGCTTGTGTACTGATTTTAGGATCAGAACCGTTTCCAGGGCTCACTCTCCTTTGGGTCAGGTTTGCTGCTGATCCTTGAGAAAATCACAAAATGGATAAAATTGAAAAGGGGCCCCTTCCTCCAGACACAAGGCCCCATCGTGCATAGCTTGGTGAGAAGATCTCTGCATGGATTTCAGTTCCTACATACACTATGCAGACTTGTGCAGTGCACAACTCACCCAACAGCACATGGCAACCCTGAGTCTAATTAATGATAATGATGATAATAATAGTTGTTAAGAGGAGTGCAAAAAAAAAAAAAAAAACTGTTGCAGGCACTCTGTCCATTATATGATTTCATCCTCACCACAATCCTGTCTTGTTCAGTTGCTAAGTCATGTCTGACTCTTTGCGACTCCATGGACTGTTTGTTACCCACCGGACTCCTCCATCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCTCTTTCCTCTTGCAGAGGATCTTCCCAACTCAAGGACTGAACTCTCCTGCATTGGCAGGAGGATTCTTTACTGCTGAGCCACTAGAGAAGCCCACCACCTGAGGTGCATATTATTATTGATCCCATGTACAGACGAAGAAATAGCAGCTGTGATGTGACATGCCTCAGAACACACTGAGGGTAATTGGCAGAAGCAGGCATGGAACTCTGGTCTCTCTCTTCTCCGAAAGCTGTGCTCTCTGCCCCTTTGGACAGTGTCGGCTCTCTGGAACCCTCAGCTATGTGGGTACCCAGTGCCCTGCCCTCCCTGCTTCTCCATATTTAAGACCGCTGAGCCGCTCCGAGCCTGAACTCATGTGGGGAATGTGGAATAATGAACAGAGCCCTGGCTCCTGGCAGCCGCCGCCCAGATGGTGGTTGGCGTGAAGTCATAGCCTTGCCGTGGTGAGGGATTGATCCCTGTATTAAATGTGCTGGTTTAACAGAGCGGAATTTATTGGTGCTTTGGCCTCTGCCACATTGAGAACTTTCCAAAGAGGCAAACGCAGAGTGAGATTTAAAGGGCCAGGTGTGGCCACACATCTCCACTTCCAGTTCAGAGCCAGGACCCTCCACAGTAACATTAACTAAGAATTACTGAATGCTTACCTTGTGCCTGGCACTGTGCTGTGTCTGACATCCATGAGCTCAGTTAAGCCTCAGAATTATCCAGTGAGGTCCACACTGGTGTTTCTTCCTGCTGTCCAGAGGGAGACAGCTGAGGCTCCAAGAACTTACATGCCTTGTCAACAGATCCTTTGGTGGCTGAGACAAGACTCGAACTCAGGTCCACATGAGTCAGATGCACCATCTCTTGATCAGTACACCCCCTGCTCAAGGGGGAGGCTGTTGAAGAGTTCCTTGAAACCTTGGGCTCTGTCCTTGGTCCTGAAAGAGCAACTGCCATCCCTTAGTATCTGCAAGGGACTGGTTCCAGAACCATCGCTACCCCCCAACCCAATACAAAAATTTATGGATGCTCAAGTCCCTTTTATAAAAAGGCACATCCTCTCATATACTTTAAATCATTTCTAGATTACTTATAATACAAAGTAAATACTACGTAGACGATTGCAAACACAATGTAAATGATACAGGAATGTCCTAAATGCAATGTAAATGCTATGTGAACAGTTGCTGGTGAGTGGCAAATTCAAGGTTTGGTTTCTGAAGCTTTCTGGAATTTTCTCAAAGACTTTTGCTTCTCAATTGGTTGAACCCCAGGGTCGCAGAACCCCCAGTACAATGTCCTTAGACCGCCTTTGCCAGCCTTCCGCTGGAGGAGACAGGTGGCTGGTCTGAATTTAATCCTTCCACACTATGGACTGTCTGGTTTCATAGCCCACACTCCTAGCTGTTATACCATATCTGTTTCCTTATGCATCATGTCTGTCTGTCTGTGTCTTTTACAG
Seq C2 exon
CCATGTGTGGTGGGGAGCTCTCTGCCGTGGCCGGGGTGGTGCTGTCACCAAACTGGCCGGAGCCCTACGTGGAAGGTGAAGACTGTGTCTGGAAGATCCATGTGGGCGAGGAGAAGCGGATCTTCTTAGACATCCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569:ENSBTAT00000008629:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGGCCACTGCTACGAG
R:
ACTGGATGTCTAAGAAGATCCGC
Band lengths:
328-2319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development