RnoINT0133936 @ rn6
Intron Retention
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50200414-50202120:+
Coord C1 exon
chr12:50200414-50200608
Coord A exon
chr12:50200609-50201981
Coord C2 exon
chr12:50201982-50202120
Length
1373 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCTTGTCTGTCTGTTGCAGCCA
3' ss Score
10.88
Exon sequences
Seq C1 exon
CCTTTGAGAAAGGTCACTGCTACGAACCCTATATCCAAAACGGGAATTTCACCACATCGGACCCCACCTATAACATCGGTACCATTGTGGAGTTCACCTGCGACCCTGGCCACTCTCTGGAACAGGGCCCAGCTGTCATTGAGTGCGTGAATGTGCGGGACCCATACTGGAATGACACGGAGCCTCTATGCAGAG
Seq A exon
GTGAGCCACCACCTTCCCCAAGGCCAGATTGCCCAGAGCCTGGACCCCAGCAAAGAACAAGACCCCAGCCTAGAAGGGGTAGTCACATTACACACTGGTTTCAGGATGAGACATTTTCCAGACCATTGGTCCTCTGGGTCTGGTTGCTGCTGGTTTTGAGAGTAATCAGAAAATGGCACACCTTCCTGCAGGCTCAGGACCTGCAGTGCACAGCAGCTGTGACAGGTGAGCCCTGAAAGGGTGTCAGCTCCTACAGACCCATCCTGTTTCACATTCTGCTGCAGTGCATAACCCAGTCAACAGCACGTGGCATGGTGACATGGGTGACCGTCACTGTTGATCATAACTGGGCACGCTGTTGAGAGCTGCATGTCCTGTGTGACAAGACCTTTTCTACAGCCACATTCAGTAGACACCAGCCCCATTCATGATGAGGAATCAGACATGGAGAGAGCGCACCCAAGAGCATTGTAGGGTCAGTGGAAGAAACAGTGGGCTTAGCTTCCCTGTGCTCAGAGCCCAGACAATATCGGCTGTGACAAACTTTCCCCAACACTGGCTCCCTAGGTCTTGCATCCAAGGCCACTGAACCCTGGCATGTGGAGGAGTGAAGGTTGCCCTCACTCCTGGTGACCACCTGGCAGTTGGCGAGATGTCATTGCCTTGCCCTGGTGAGGGACTGGCCCCTGAACTAAATGTGCTCCGTGAAGAGAGAATGTGTTGAGGCTTCCACCTCTGCCATGCTGAGGGCTTGCCAAGGCAGCAAACACTGGGATTGAGAGGCTAGCCGCTGCATCCCTGCTGCTGATCCAGGCTAAACCTTTCAGAGACTGGAGCCCGGTCGCCACCTGAGCACTCACTGGGGCCAGCCAAGGTGCTGCAAGCTGGTGGCCTCAGTCATGATCCATCATGAGCCAGCATTTCCTGACGTCTCAGAGAAGGAATCTGATGCAGTCAGACCATATACACACCTCATCCAAATCTGGCAGAACAGTGGGAACTAGTGGGAAGTGGGGGCTGTCCTTGATGGGGAAGACAATGCCAACCTCCGCCCTCTCGGAGCTGCAGGTGGGGCCAGTAGCCTTTATTCAGCACATGTACAGACACGTGCACACACGTACATGCACACATAGACACATAGACACATATGCATGCACACTCGTGTAAATGCACACATAGACACATATGCATGCACACTCACGTAAATGCACACATGCACACATAGACACATATGCTGCCCCACCACTCCACCCCATGCCACACAGGGACCCACAGATGCCAATCTCACCCCTACCCCCAACCCCTGCAAACTCCTAACCACTTATGCTGTGTTGGCTTCCTCACAAGGGTGTCCTCTTGTCTGTCTGTTGCAG
Seq C2 exon
CCATGTGTGGTGGGGAGCTCTCTGCTGTGGCTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGTGTGTGGAAAATCCACGTTGGGGAGGAGAAGCGGATCTTCCTGGACATTCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612:ENSRNOT00000032193:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGTCACTGCTACGAACC
R:
CTGAATGTCCAGGAAGATCCGC
Band lengths:
326-1699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]