DreINT0133601 @ danRer10
Intron Retention
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44805765-44810322:+
Coord C1 exon
chr10:44805765-44805959
Coord A exon
chr10:44805960-44810183
Coord C2 exon
chr10:44810184-44810322
Length
4224 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GTGTGTGTCTGTCTCCACAGCTC
3' ss Score
11.56
Exon sequences
Seq C1 exon
CGTTCGAGAAAGGCCACTGCTACGAACCGTATATTCAGAATGGAAACTTCAGCACGACGGACACGGCGTACGGTGTGGGGACGGTAGTTCAGTTCAGCTGTGACCCGGGACACTCTCTGGAGCAGGGCCCGCCCGTCATCGAGTGCATAAACACACGAGACCCCTACTGGAACGACACCGAGCCGCTCTGTAAAG
Seq A exon
GTTTGTATCTGCTCACATTCACAATCAGTGTATTACTGACCAGGAAACAGCATGTGCATCATTTCGTTAGAGCAGGGGTCTCAAACGGCAAACTGCCAGCCTGCAGGTCATTTGCAGCTCTCCTTCCTCTTCCCTCCGGCCCAAAACTGATGTCAAAAACATGTTGTGGACTTTGTAAGTGTAAAAACTGAACGCTTCACTAGTTAGAAAACAGTTAAACAGAGCATCTGCAGCGCGAGAATAAAGAACGAGCCTCCTCCATTCAGCCTCTTTACTTTACTCCTTTACTTTACTCCTTTACTTTGGTGGAGTGAGGAAACGGTGGAAACTCACTCCACTGAACACATCCAGTAGCCTACATATTTAATTTCCTTTATTAAACACAAAGATTTGTGTCTAAACTGTTTCTAAATTCAGTTCTAATCTCCAGCAAAGGAATAAATGAACAATAATAATGAAGTGTGCTCAGAAAACTGAGTTATATCCAAACACACGTCCTGCTCTTATGCCCCATATGCTGATGCAGACGTCTCCAAAACCCCACAGCTGGACACATCTACACTTGTGTTTATTAAAACAAATATAAATCTGCAGATAATAAATAATATAAGAACATTCAAATGCAAATTTTCATAATTAAACTGAAAAAAGCAACCCGGGCTCATTGTGGAAACGTAGCCCCGCGAACATTTCTGTGGACCGCGTGATACGTCCCGGGAAGTACGTATTCGAGCGGTGTTTGTTTTCGCGGATCCGCGAGAGGCCGCTGTGCATGCTTTTTCGCGTCTCGGGTGCCTCTCGGGAGCGCGCGCCGTTCGCACCCACGCTGTTTTCACGCGAAAAGCCGCTGGATTGGCCGACCCGGGCGCCCTCCTCTTCCTCCTCCTCCTTCCCTAAACCCAAGCGACGGTTTCCAAAAGCCGTCCAGAAAGAAAAAAAAAAGCTAAAGCCTTCGTCTTCGATTTCGACCGCGTTTTCGGATCGCGCCGCGTTCCCGCCCTTATTTTTCGGATTCTGTTTTTCATCTTACCTGATTTCCGGAACCTGCTGTTCCCCGGACTCGATCCCGATCGTCGTCTCCGCGGCCGGATCCTCCTCCTCCAGGGCCTCCGCTCTGCCGATGCAATGCTGTGAGCTAAGCGGACAAACTGGCTGCATCAGAAAAGCCCTCCACTAGGAGGCGAGCCGTCGGCCAGCGAGCGCGAAGAGGAGGAGCGGAGTGGCGCCACACTGCTAAAAACTAAACGCGGCCGTACGTACCTCCGGCCACGTAAATCGCGGCCTCCAGAAACGTCCGCGGGGCTACGTTTCCAGAATGAGCTTGGGTTGGAAAAAAGGGGAGATTGAGGAGATTATCTTAATTATTTGTTCACCTTTCATGCTAACAATAGAATATTGCACTATTTGGATTTGATGCAGAACATACACAGTACTAAAGGATATCATTGATCCTCTGCTAAATGTCATGGGCTGAAGCTTATTAGTCCGCTTTCTCTAATTATGCTCTGGTAATTGCGTCAGATGTAAATGGTATGATAATGTGCTTTGATGTATGAAGTGCTGTTCAGCTTGTCCTCTGCCGTCTGACTAATGTTCACACATGTTGACCTGATGATCAGAGCTGGTGCAGTTGTTGTTGTTAACACGTGTTTAACCCTGCTGTAATTCCTCTTCAGCTGCTTAAAGCAGGTTTTCTGAGACTGACAGCAGGTCAGTGGTGGATAACAGACGAACGCTGGTCAACCACACATGCTGCAGTTACACATGCTTGTTATCATTCGGGTGTCGCATGCAATTAATTTCACAATTAACACCGCGTAGCATGGAGATTCACAAATGCGGGGAGCAGAACAGACAGAAGTGAAGAATAATACTAGACAGAAGATTGTGACCATGACTGAATGCATTTTACATTTTGGGTAATTATCTTAATAGTTAATAATGTATGTGGATGCAAATTTTGATAGATATGTGATATTGTGTGCATAATTATAATTAATATGTTAATAATGGCATTATTATATGTTTTTTTCATTTGAGTTTGTGTAATTTATGTGCAGTTGAAAGCATAAGCATACATCCACTGTATAAAAAGGCACATAACCAATTTAAAGACAGTCAGATGTTACTGTGACTGAACTCTTTCTCTTTTAGGTAAGTTAGGATGATCAGATGTGTTTCTGTTCTGCTTAATAACAGAATAATGAGAGAGAGATTTGTTTGGGAAATTGTTCTAACTCTTCTTGAAAGTCAAGTTTACACACAATAAGATTATTCGGCCTCTGATAAAGCTCAGATGATGATGTCAGGGTTTTGGAAGTTTCTGATTGGCTAATTGACAACATTTGAGTTAATGTGAGGCACAACTGTAGAATAGTATTGAAGGATAAGCTCAAACACACTGCTTCCTTCTGTGACAACATGGAGAATCAACAAGCCAGAATCAACAACAAAGCCAGATTACAATTAGATAATGACACTGGGGAAAAGATTAATGTTTGGAGACATGTCCTGTGCTCTGATGGAGCTAAGATTGAACTGTTTGGCCATAATGAGCAGTGTTACATTTGGAGGACAAAGGGGAAAGCGCACAAGCCTAGGAACACCATCCCAACTGTGAAGTATGGGGGTGGCAGCATCATGTTGTGGGGCTGTTTTGCTGCAGGAGGGACTGGTCCACCTCACAGCATAGATGGCATCATGAAGACAGAACATTATGGAGAAATACTGAAGCAACATCTCAACACATCAGCCAAGACATTAAACAACACGGGCTCATTCTGAAAACGTAGTCCTGTGAACATTTCTGGAGACTGCGAATTATGTAGAAGGAGGTACGTATGGCTGCATTTCATTTTTTAAGCGAACGCTATGGGGTGGCATGACGGCGTTCCTTTTTGCGAATACCGGCTGACCGCTTACCTCCGTGTGGAAGGCTTTCCCGCCGCAACCAGGTTGTCCAGTTAGCACGACGGCGACGATGACCGGGTTCGAGTCTGGGGAAGAGCAGTTCCAGAAATCAGAAACAAAAAACAGAATTCAAAAAATAAAGTGAACGAGTTCATGACAGGGTGAGAATGTGATAAAATCCGAAAACGTGGTAAAAATCAGACGAGGGCTTTTTTTTTTTTTGTTTGGCTTTTGTGAATTGTTGGTTGGGTTTAGGGAAGTAAGCGGGTGGGCAGGTCAATCTGTAAAATTGGTTTGGTTTAGGGAAGGAGGAAGGTGGGTCAGCCGATTGGCCGGTCGCCCAGGCAATCACTTAGTCAGTCAGACAGACGGTTGTTCGACAGCGGCCTCTGGTGGGTTTACGGGAGAACAGCACGGGCGCAAATGGCACTCATGAGAGACATTTGAGATATGAAAAAGTGCACACAGCAGCCTCTCGTGCATTCGCAAAAACAAAAACTCCAAAATGATGCACCTCCCGGGACGTATTTTGTGGACTCCAGAAACGTCCAGGGGACTACATTTTCAGAATGAGCCTGGGTTGAAATTATAACTTGGCCACAAATGGGTGTTCCCAAAAGACTTTTGAGAATACTGCCAAATTAGGACAAATGTGCTTTAAGGACAACTGAGGGAATGTTTTGGAGTGGCCATCACAAAGCCCTGATCTCAATCCTGTAGAAAATTTGTGGGCAGAGTAGAAAAAGCTTGTGCAAGCAGTCAATACACACAGCAACACTGGAGACAGAGTGGTTTGATTAGCATTAAAGTGAAGTTAAACATCTCCCATGGCCTGCACAGTCACCAGAACCAAACATTATTGAGCACTTTGGGGTGTTTTGGACGAGCAAGTTAGGAAAGGTTTTCCTCCTCCAGCATCATGTAGTGACCTGAACACCATTTTGAAGAAGAATGATATCCCTCTGATCGCTGTGCAGGACTTGAGTCTGTCATTCTCAAGACCGACTGGTGCTGTATTGCAGGGGTGGCCAACCCTGTTCCTGGAGAGCCACCTTCCTGCAGATTTCAGTTGCAACCCATATCAAACACACCTGCCTGTAATTATCACGTGGTGTTCAGGTCCTAATTAATTGGTTCAGGTGTGTTTGATATGGATTCCAGCTGAAATCTGCAGGAAGGTGGCTCTCCAGGAACATGGTTGGCCACCCCTGCTGTATTGGGTGCACACTAATGAAATTAGTATAGTACTAATCTCTCTCTCTCTCTCTCTCTCTTTGTCTGGGTGTGTGTGTGTGTGTGTGTCTGTCTCCACAG
Seq C2 exon
CTCTGTGTGGTGGTGATCTGTCGGGCCCCAGTGGAGTCATTCTGTCCCCGAACTGGCCTGAATGGTACGGTGAGGGTGAAGACTGCAGCTGGAGGATCCACGTCGGGGAGGACAAACGGGTCCTGCTGGACGTACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594:ENSDART00000172128:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]