GgaINT0006824 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7351996-7352722:+
Coord C1 exon
chr15:7351996-7352192
Coord A exon
chr15:7352193-7352527
Coord C2 exon
chr15:7352528-7352722
Length
335 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
AGTCAGCACTTGCCCTGTAGAGG
3' ss Score
2.39
Exon sequences
Seq C1 exon
CCTGAACCTCACCAACAGCGACATCCTCACCATTTATGATGGGGACGAGCTCTCTGCCCGCATCCTGGGACAGTACGTTGGCAGCAGTGGCCCCCAGAAGCTCTACTCCTCCAGCCCTGACCTCACTATCCGGTTCCACTCAGACCCTGCTGGGCTCATCTTTGGGAAGGGCCAAGGATTCATCATGAACTACATAG
Seq A exon
GTAGGGAGAGGGCGGGGTGCTGGGCTCATCCCCAGCCCTGACAGCACATGGGGACAACATGCATCTGCAGCAGGGTTTGCAGGGGCTGGTTTTGCAAGTGGGGATGATTGCTGGGCCACAGCTCCTCTCCAGCCCCAGCACACCCCTGCAGAACCCACAGCCTGCTGCAGGGCTCCGGCTCGGTTACGTCTGGGGTGACTCCCAAAGGACCCCCATTATCCCCGATGCCATCTGCAGACCAGCAGGGCTGCTCACGGGGCTGTGGTGCTCAGGGTGGGCTGCACACCCTGCAAGGAGCCATGTGCATGGGGTAACAGTCAGCACTTGCCCTGTAG
Seq C2 exon
AGGTGTCCCGCAACGACTCCTGCTCCGACCTGCCCGAGATCCAGAACGGCTGGAAGACCACATCACACACCGAGCTGGTGAGAGGGGCCAAGATCACCTACCAGTGTGACCCAGGCTATGACATCGTGGGGAGCGACACGCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCTTTCTGTGAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCAACAGCGACATCCTC
R:
TCCAGCTGAGGTCCCACTG
Band lengths:
358-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]