RnoINT0133923 @ rn6
Intron Retention
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50217997-50223110:+
Coord C1 exon
chr12:50217997-50218193
Coord A exon
chr12:50218194-50222915
Coord C2 exon
chr12:50222916-50223110
Length
4722 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
AAGATGTCTTTGTTTTAAAGAGG
3' ss Score
3.22
Exon sequences
Seq C1 exon
CCTGAATCTAAGCAACAGCGACATCCTGACCATCTATGACGGAGATGAGGTTGTGCCCCACGTCCTGGGCCAATACTTTGGCAACAGCAGCCCTCAGAAGCTGTACTCCTCCACGCCGGACCTCACCATCCAGTTCCACTCGGATCCTGCTGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATATAG
Seq A exon
GTAGGTACCCTAACCCATCCATCTTGGTTGTGTCGGAGGAAACGCATGGTGGTTTCCCATGGGTACATCTGTGTGGATGCTGAATCTGTTAGTGCGCAGGCATGGTCATGTGTGGCTGTAGAGGGGTAGGCTCTCGAGTCATGAGGACCAGGGTTTATGTCCTAGCACCATTGTGGAAGTCTGTGTGATCTTGTGAGAGTCAGTGAGCCACTCTGAGCATCTTCTCGTGTGTGTAAAGTGGAAATACTGAGTGGTCTTAGTTAGGGTTGTACTGCAGTGAACAGACACCATGACCAAGGCAACTCTGATAAGGACAACATTTAATTGGAGCTGGCTTACAGGTTCAGAGATTCAGTCCATTATCATCAAGGCGGGGAGCATGGCAGCATCCAGGCAGGCATGATGCAGGAGGAGTTGAGAGTTCTACATCTTCGTCTGAAGGATGCTAGTGGAATACTGGCTTCCAGACAGATAGGGTGAGGGACTTAAAGCCCACACCCACAGTGACACACCTCCTCCAACAAGGCCACACCTCCTCCAACAAGCCACACCCACTTCAGTAAGACCACACCCACTGCAACAGAGCCACACCCACTCCAACAAAGCCACACCTACTCCTCCAACAAGGCCACACCTACTCCTCCAACAAGGCCACACCTCCAAATAGTGCCACTCTCTGGGCCAAACATATCCAAACCATGACACTGAGGAACTGATGAGAGCACTTAGAAAATGTGACCTCCCAGTACTAAGGCATGTTGTATTTTGCCCTCTGCCCTGATGTCACTGCACATACCCACCTCCCTCTGCTGGCACCTTCTCAACCCTCATCTGCTCTCTGTCTCCTGACCTAAAGCCAGCTCTTCCTAAGATACCCTTTCTGCTGAGTTCTTAAACATGGCAGCACCACCTGCCTGTCCTCCTTCACCTGCTTCAAGGCCTGTACGCACAAGCAGGGTGCATCTTCCTTGGTTCCTCAGAGTGACCGATGAACCCTCCATAAAGCAAAGCAAGAAAAACAGCACATGGTCAAGGTTAAGGCCAGTTCACATCTCACTCTCCATCACCATAACCACCATCACCACCACCGCCATCATCACTGTCATCACCATCATCACCACCACCACCACCGCCATCATCATCATCACCACCACCACCACCACCACCATAACCCACAACACCACAACTGCAGTAGCCACCACCATTTACACAACCATAGTCACCAGCCCTTTAGCTCTAACTAGCAGGACATGTATACCACAGCCACAGGACCTATACCCACACCACCATCATCGCCATCATCATCACCACCACCTCTATCAGCATCACCAACAATACCAATAGCAACAGCCACACCCTTTCCTAGCAAGTGGGATGACAGCTTCCCTGCTTTTCCTGTCTTCTTTCCTTGCCTCCCTCCATCCGTACTCCTGCCTTTCGAGACATGTCTCAGATCCACACACATCTCTCTATACCCTTCCACGAACACTCCCTTGGCCCAGTCCACCATCACCCACATCAGTCAGGAAGGTAGGACACCATGACACATTTCTTACCTAGCACCAAAGAGACTTGGGCATCCAGCAGAGCCAACCCTCTCCCAGCCTGGCAGAAGCTGCCCTGGGTCGCAGAGCGTGGCCGGGATTGGTGAATCAGGGTGGAGCCGAAGCTCACACCCAGGTAGCCTGGTTCCCGGCTCTCCATGTCCCCTGTTCTGTGATATTCTTGTTATATGTAGATCTCCTCAAGGTGAGAGGGATGGTTAATGCCTGACCGCTCATGGCCGGGATGGTGGGACACCCTGCACATCCTGATAACAAGGTTAAACTGGTGGTTGTGGTCTGTGCTAGCTCCTCCCGGAAAGTGGCAAGGCATCTTAAATTCAGGATGCAGCAGGGAAACAGAGGGCTCATCCAGCCAAGCCCCTGATTTCTATACCACAGAGCTCCTTGGGATGAATGAAGGTTTCCCATGCTTCGCCTGGGAGATTTCTGGCCTCTTTCTAACACCGACTTTCCTGTCTGCCCTTCTCTAAGTTGACAAGGTACACCTCTGGCCAGTAGTGACCCCAGGAGACTGGCACGGGCTCCCATAAGGCAGTTACTTTTGTCTTCTCAGCTGGCAAGCAGCCTTCACCCTCATCTGCCTCCCCCACTCACTTCTCTGACTTTCCAAAAGGCTAAGGCAGGCATGCACACTCTCCATCCTGCTTCTTGGACCTGGCTTCCTCCCCCTTCTTATGCTGCAGATGGGATGTTGCTGCTGCAACTCCTGAGATTTTCTCATGGGCGGGGCACAGATGGATGCCCTTCTGATGAGTGCCCTTTGGAGGGAAGGGTTCTGGTGGCTTTGCTCCCATCCGTCTCCAGAGCCTCCCTCTTCCTCTCGGCTGTAAGATGAGGTCATCCCATGGTTCCTCTATGGCCCAGTGCCCGAGCCAATCTTACAGAATGGCATCAGCTAGATGGCAAAGATCTGACTCCATCCAGGGCTGATCAAGGTGACCCCGGCATCTGGCCAGTGTCCTAAAGAAGTGTTCTTGTACACTGAGTGTGAAGCCGTGTGTGCTGTGAAGGTTCAGGGCTGGTCATGCGTGTTACGTGTTCACTCCTCTAGTTAGGGAGTAGTAAATGAACTCTAACCTAAGGGATAATGTCCCCTGCAGTGCTGTACTGAGGACTGAAGGGTTCCACTTGATCCAAAGGCAATCAAATGATTGATTACTGATACCTGCTATGAGCACAAAGTAGGCCCATGGTGCTTGTCTTAGGGTTTTACTACTGGGAGCAGACACCATGACCAAGGCAACTCTTGTAAGGACAACATTTAATTGGGGCTGGCTTACAGTTTCAGAGGTTCAGTCCATTATCATCATGGCAGGAAGCATGGCAGCATCCAGGCAGGCCTGGTGCAGGAGGAGCTGAGAGTTCTACATCTTGATCCCTACCAGGATGTAGAACTCCTGGCTGCAGCAGGAGACTGTGTGCCACCATAGGCGTAGCTTGAGCATAGGAGACCTCAAAGCCCCGCCTCCAATAGTGACACACTTCCTCCAACAAGAACATGCCTCCTCCAAGTAGGCCACAGTTCCTAAGAGTGCCACTCCCTGTAGCCAAGCATTCAAATACAGAAGTCCACGGAAGACAAACCTATTCAAACCATTACAGCACAGCATGTTTGATACTTCTGGGCATTTATTTTGCCCAGAGATTGGTTAGATCCTGGTGCTATATGGCCATGAACATGAAGTCATTAATTCAGATTCCTAGTGCCTGCCAAGGCCTTCACAGACCCATAATCAAATACACAGAGGTTCATACATCTTATCAGGCCTGCGTTAACCGCCATTTGGCTGTGCCATGTGGAATGGACAGTGTCATGATCCTTGACCTCATTCTGCAGTTGAAGACGGTGAAGCCAAATGTGTGTCTCAAAGATGACTGGAGCTGTACCTCTTCTTTAAAAGAGAGGAAGGGCTAGCCTGGGCTCTGGCTTGCATGAATCCCTAAGAGCCAGGCAGGGTGGGATATGCTCTTAATCCTAGCACTCAGGAAATGGATGTGTGTGGATCTCTGTGAGTTCAAGACCACCCTGGTCAAACAAGGCTTTATGGTGAGATCCTATCTTTTTTAAAAGGGGGTGGGGGAGACTCATGAAGCTCTGGGTTCTATCCCAAAACTTCATAAATGACTCCCAGCATTTGGGAAGAGGAAGGTTAGAAATTTAAGGACATCTTCAGATAGGCAGTGAATTCAGGCTGACAGAAGACTTCCTGAAAGTGGAAGAAAATGAAGAGGCGAGGGAAGAAGGGGGAGGGGAGAGACAGAGACAGATCAAGACGAAGCAGAGAGAGTTGTTTGACTACCAGAACGTCTCCTTGCTTGCAGCAGGGTTAACAAGAGCTTAAGGAGACAGACAGTTTGGGCATCTCCACACCCCTGGGGGAAAACAGAATTTCCATTTCCCTGGTAGCGACCTCTGGAAACTGAATGGTGTGTGTAGGTGACTCAGTCATGCTACCCAGGGAGAGAATGATGTGGAGAAAGTAAAGTCACTCCTGCCACAGAGGGGACAGAGTTCTGCACAGGGGTATGGTACAGCAGCACCCACTGAAGGTCGGATGGCCAAAGCTTTCTGTCTAAATGCCAGAGAAAGCCCACGGCGTCCGTCCCATCTCTCCCTCTCAGTCCACCTTCCAGCACAGGCAGCTGCGTCCCAGACTTAAAAATAGGGCCCCCTGTCCTCCCCTCCAGGCCACTCTAGAAGCAATTTCCCTTGTCCTCTTTCGGCAGACAGCCTGGAGAGGTCCTTTCTCCAAATAAAACTGCAATAACATCCTGGGGGGAGCTTCTACTTCCTGCTCAGGGCAGCTTTCCTTGGGCGGTCAAGAACGCCGCTGTCCTTAGAAGGACACAACACTGGGTCGGGTCTGCTCACTGTACACTCTGACACGAGGACAGTTAAGAGTAAGGTTTGGACTGTCACCTCAGTGACAGGGTTTTGTAGGAGGAAGAGAGGATCCCACCAGTGGATAGCTCAGCGACGCCTTTGAGTGTCCTGGGTTGTGGACAAGGTTCTCCGCTGGCTTGCACTGGCGGTAAGCTGTTGTCCTGCTGTGAACTAATCCTCCTCAGGCTTGGGGGGGGGGGTAGCTGTAAAGCACATGACTCTGAGTCTGAAACCTCTCCTCCCAAACCTAAGGAAGATGTCTTTGTTTTAAAG
Seq C2 exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACCACTTCCCACACGGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGCGACCCTGGCTACGACATCGTGGGGAGTGACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGACCCCCCGTTTTGTGAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612:ENSRNOT00000032193:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]