MmuINT0142281 @ mm10
Intron Retention
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112438402-112441010:-
Coord C1 exon
chr5:112440814-112441010
Coord A exon
chr5:112438597-112440813
Coord C2 exon
chr5:112438402-112438596
Length
2217 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
AGGTGCTCTTTGTTTTAAAGAGG
3' ss Score
4.18
Exon sequences
Seq C1 exon
CCTTAACCTGAGCAACAGCGACATCCTGACCATCTATGATGGCGATGAGGTTGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAGCAGCCCTCAGAAGCTGTACTCCTCCACACCGGACCTCACCATCCAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATATAG
Seq A exon
GTAGGTATCCCAACCCATCTGTCTTGTTTGTGTTGGAGGAGAGGCATGGTGGTTTCCTGTGGGTACGTCTGTGAGGATACTGACTCTGTTAGAGCGCTGGCGTAGTTGTCCTGTGTAGTTTTAGGAACACCATTGTGGAAGGCTGTGTGACCTTGCGAGAGTCTGTGAGCCACTCTGAGCACCCTTCTTGCTTGTATAAAGTGGAAATACTGTCTGTCTTAGTTAAGGTTTTACTGCTGTGAAGAGACCATGACCAAGGCAACTCTTATAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGCCCATTATCATCAAGGTAGGAACACAGTAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCAACAGGAGATTGTGTGCCACACTAAGTGTAGCTTGAGCGTAGGAGATCTCAAAACCCACCTCCACAAGTGACACACTTCCTCCAACACGGCCACACCTCCTCCAATTAGGCCACACCTGTTAAGAATGCAACTCCCTATGGCCAAGCAGTCAAACACATGAGTTCATAGAGACCAAACCTACTCAAACCATCACAGTGCTGCATGTTTGATACTTCTGGGCATTTTTTTTGCCCAGAGATTGGTTAAACCCTGGTGCTAGCTTAGCCATGAACCTGAAGTCATTACTTCAGATTCCTAGTGCCTACCAAGGCCTTCACAGACCCATCAAATGCACAGAGGTACATATATCTCATCAGAGCCATGCCTGTGTTAATTAACCGTCATGTCTCCGTGCCATGTGAGAAAGACAGTGTCATGATTCTTGACCTCATTCTGCAGTTGAAGACAGTGAGGTGGGATGTGTGTCTCAGACATGACTGGAGCTGCACCTCTTCTTTAAAAGAGAGGAAGGACCAGCCTTGGCTCTGGCTTGCATGAATCCCTAAGAGCCAGGTGTGGTGGGGGATGCTTTTATCCTAACACTCAGGAAACAGATTCGTGTGGATCTCTGTGAGTTCAAGACCATCCGGGACTATAAAGCAAGTTCCAGGACAAACAAGGCTGCATGGTGAAATCCTATCTTAAAAGAAAAAGGGGCAGGGGGAGAAGAGGACTCATAAAGCCCTGGGTTCTATCCCAGCACTTTATAAATGACCCCAGCACTGGGGAAGATGAAGATTAGAGATTTAAGGACACCTTCAGATATACAGTGAGTCTAGGCTAACTAAGAGGCTACATAAGACTTCCTGAAAGTAGAAGAGAATGAAGAGAAGAGGAAGGGGGAGGGAGGGAGGGAAGAGAAGGAGGGGGAGTGGAGGGGGAGGGGATAAACAGGCAGAGACACAGAGAGAGAGCAGTGTCTGACTATCAGACCAGTCTCCTTGCAGCAGAGCTTATGGAGACAGTTTGTGTGTCTCCATGCTGTCTGCTGGGGAAAAACAGAATTTCCATTTTCCTGGGAGAAGCCTCTGGAAACCGAAAGGCTAGTGTAGGTGACTCTGCCATAGCCACCCAGGTACAGAATGGTGCCAACAGAGTGAACTCTGAATGTCACTCCTGCCACAGAGGAGGGGACAGGGTTCTGCACTGGGTTGTGGCATAGCAGCTTGCACTGAGGGTCAAACGGTCAAAGCTTTCTCTCTGAAGGAGTTTGGCCATAGGAAGCCAATGGCGTCCACCCCATCTCTCCCTCTCCATCCATCTCCCAACACGGGCAACTGAGTCACAAACCTAAAAATAGATCCCTCCCCCTGCTCCCCTTCGGGCTACTCTAGAAGCAATTTGCCTGTCTACTTCCAGCAGACAGCCTGCAGAGGTCCTTTCTCCAAATAAAACTGCAATGACATCTTATGGGAAAAGCTTCAGCTGGCTCGGGGGTGGGGGGCTTTCTTTGAGTGGTCAAGGATGCCACCGTCCCTAGAAGGACATAAAACTACCTCGGGTCTGCTCGCTGTGCACTCTGGCACAAGGACAGTCGGGAGTAATGTTTGGACTGTCACCTCAGTGACAGGGTTTCATAGGAAGAAGAGAGGATCCCACCAGTTGGAGCTCAGCGATGCCTTTGGCTCTCCTGGGTTGTGGCCAAGGCTCTTCAGCTGGCTTTCTCTCTTGTCTTGCTGTGAATGAATCCTCCCCAGGCTCGGGAGGCAGAGGGAGTGCACACGACTAAGTCTGAAATCCACTTGTCCCAAACCTAAGAAAGGTGCTCTTTGTTTTAAAG
Seq C2 exon
AGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGTGACCCAGGCTATGACATTGTGGGGAGTGACACCCTCACCTGCCAATGGGACCTCAGTTGGAGCAGCGACCCGCCGTTTTGTGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153:ENSMUST00000075387:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types