GgaINT0007721 @ galGal3
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1075257-1076251:-
Coord C1 exon
chr15:1076059-1076251
Coord A exon
chr15:1075369-1076058
Coord C2 exon
chr15:1075257-1075368
Length
690 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AATTTTATTTTGCAAATCAGCCA
3' ss Score
1.83
Exon sequences
Seq C1 exon
GTAGTTATGCCATGGGTGAGCTGGTTAGAAATTTGCCCAGCAGGCAGCAGAGATCTGCAAAGAACCTGGAAGAGGATACAGTGGTTGCTGTATTGAATACAATCCATGAAATCATTACTGACAGCTCAGAAAATGCAAGGTCTCTGATCCAGACACAGGGCATTCAGAAGCTGGTGGCTATCAGCAAGTCAAG
Seq A exon
GTGAGTAACAGTTGAAAACAAAATGTATAAAACTCACTGCAAACTTGAAAGTAGCACAATGCAAAGTAGTTTTTTGCTTTCCAAAGCCATTCTGACCTTTCAGAAGTGTAGCTAAACAAATATATACACAATAAAAAGTCACGCTTTCAGTAGACTTGTAACTTAAAAAAAAAAAAAAAAAAGAGAATGAAAGCCTGTTAGAACATGATGTCTTAGAATATGTCACCAATCCTTTCAAGGATTACTATTGATGAAGTCTTGTTTTAAATTAAATGGTCAAGGATGTGCAGTAATTGTTTTGGCTAAAGGCAGCTCAGAACTTCGTGTGTCTTGTGTTTTGTTTCTTTTTTTTCTCTAAATAAATCCAAGCAGGATGGAATCCATCTATTTTCTATTAGGGACAAGTACAAAATGAAATGAGCACCCTGGCCTCAGTGCTTGCCCAGGCATGCAATGTGAAAACACAAAAATCTGCAAAATTTGACTTCTTGGATTCTTTTGTCAACAAACACTTATATATGTGAAGTCATCACTAAATTATTTTACATACATCTTAAAACTCATAAGCCAATGAATAGCTCTGTGAATTAGTAGGTACCTCTTGTATATTGTTTTGGTGCAGAGAAGTTGACATATGAATAGTCTTATATTGCTTGATATTTAATGTTCTAATTTTATTTTGCAAATCAG
Seq C2 exon
CCAGTCTCCTCGAGAAACAAAAGCAGCGTCTCACGTTCTTCAGATGATCTGGAGCTACAAGGAGTTACGAAATGCTTTGCAGAAAGATGGCTGGAACAAATCACACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0278111=G6PD_C=PU(31.4=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTATGCCATGGGTGAGCTG
R:
TGGAAGTGTGATTTGTTCCAGCC
Band lengths:
302-992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]