GgaINT0007723 @ galGal3
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1073973-1074643:-
Coord C1 exon
chr15:1074553-1074643
Coord A exon
chr15:1074027-1074552
Coord C2 exon
chr15:1073973-1074026
Length
526 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TCCATGCTTCTGTCTTACAGATA
3' ss Score
10.78
Exon sequences
Seq C1 exon
TCTGTTTCTGCAACTCCAAAGAGTTCCAAAGGTACTGCTGGCAGGTCTGGCTATGATGACAGCACTTTGCCGCTGGTGGATAAAAGTCAAG
Seq A exon
GTCAGTTCTGCTAGTTACCACTTTCTGTATGTGTTTTGCTTGCTTGCTGAATTTGCCACAACTGTGTTATGGGAAGTGAAAGGGAGGGCAAGACATGAAGGGGTAAATGTATTACTTATACAGTGCTTTTTAATTCATAGTAACGAGACGATCGGCCCATTTATCTGGATATAAGCAGTTTTCCTTCTTTTGCAAAATGTGCTCTGCCGATACTGCATACAAGTTGAGAAAACAACATGATCAGTTAGAATAATCTGGGAGAATTTGGGATAGGTGTAAGATGGAACTTAAGAGAAGCTTGTTAAATGGCAGTTAGTCCAAAGCAGAAAATAAGGATTTCATATGCTGTCTGGAGAGCTTAAATTGTCCTTTCTGAATGGATAGCAGTTGAATTTTTTTTTTTTACAGGTCTGCAGCCAATACTTCAAGGACCTCTCTGGTTCTGAGACTAATTTAGAAGTACCAGTATTGAGAAAATCAAACGTAACTTGAGTAGTTACAGTTATTCCATGCTTCTGTCTTACAG
Seq C2 exon
ATAATGAGAAAACTGGGAGTCGTGATATGATACCTATGGATGAACTTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0278111=G6PD_C=FE(58.8=100)
A:
NA
C2:
PF0278111=G6PD_C=PD(5.9=15.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]