GgaINT0007726 @ galGal3
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1065941-1069095:-
Coord C1 exon
chr15:1068982-1069095
Coord A exon
chr15:1067586-1068981
Coord C2 exon
chr15:1065941-1067585
Length
1396 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
GTTCTGGCTTTATTTTGCAGGGC
3' ss Score
9.4
Exon sequences
Seq C1 exon
AATGACACAAATAGGAAAAACATTAACAGGAGTAACAGGGCTTCGGTGAATCTGGTGGATGCTCGTGACATTAAACCCCAGCCTGTTGACTCCTGGGTCTAATTTGCATGCATG
Seq A exon
GTAGGTCATTTTAATGGTAATTGGTGCTAGTGATTAACTTGTCTTGTGCATGATCTGTTTAGCTGTGGAATCTCTTCAAGGCTAACTGCTAACTGAGCCCTTTCAGAGAAATGAAAATACATTTGAAAATGTTGTATTTATATTATTCATTGTGTCTTTAATGAGACACAATCAGACACCCCTGTTTGATTAAAAAATAATCTGTCAAATAACTAGACAGCACAGTAGTATCTTGAATGATTGGCTGTCAGCCAAAATGTGAAAGATTTCTCCTGGTAGGCCATGGGAATGAATTTAAATAGTGCCTTCCTACTTCCAACCATTTTTTCCCCCTTCACACTCATTATAAGGATTAGCCTGAGACTAAAAGAAAAAAGCATATCCTTCTCTATTTATGGATGTCCCCTGAGGTTCTCTAGAATTACAAGGCCCTGCCCATCTGCAGGAAGGCTGCTGCCTGTATACAGTTACTTTGCAAGGGGAGGTGATTTTGGTTACACGTATAACGATAAGCCACAACTCCCACTTCTCAATTTCTTCTTTGTTGTTAAAGAAAGGCGCCTTTTTGTCTCATTCTAGCTCTCTGCCTTTGCCATGAGCCAAGTCCCTTAGTAATGTCACTGTCCTTTCTTTACTCCTGCCATTGCTAATCTGCCTCCCGCTGTTTTGCTAAACAGTCTTCTACCCTGGTTATACCATCCATCACTGTGAGATATGATGCCCCATTTGGAAAAGCAGATTTTGTGCCCCTGGCTGGCTGAAGGAACACCTAAGAAACAGTTGCAAAGACACTGGACAGCTTCCCCATCAGAATGGACAATAGGCCTTTAAGGCCCAAATTCCAAAAAGTGGAATGTTATCCACTCCCATAATTAGACGTGGAAATCACATGCAGTAGTGGGAGAGAGAGCTCTAGTATGTTCGGGGTTTTCATTTTTGAGGTCTCCCCGAAAATGCTTCTCCTTCTTTTAAGACTCTAGTACAAGTGCTACGTGTTTGCAGATTGTTTCTCTTCCTGGGCTGGAAGTGCTTGGCCAGAGCGGTCTTTAACACCCCCTGGTACCCTTGTGTAACCACAGAGCAGGCCCCAGCCCTGCTGGCTTCACACAGCTGGTCGGTGCTGTGTAGTCAGCCTTGTTGGCTCAGCCAGAGGGCAAGGATAAATGTGTGCAGTGGCTGTACACCTCCAGTCTTGCACTCTTCTTCTTAGTGAATGCTTATGGGTGGGACTTCGAATGAAGTTTCTGTTCATTTTCTCTCAGTCAGACCTTTCAACAAGCCCATATACTGGGGATAGATTGGGATTTCCATTCGTTGTTCTACCACTGGGTGATGGAGATCACCACCAATGCCGTGCTGCTTGCTGGTATTAATCGGTTCTGGCTTTATTTTGCAG
Seq C2 exon
GGCTAGAGTCCAACCACATTTTTTTTTAATTGAGGGGGAGAAAAAAGCATTGAATTGACACAGAGGATTTCATCAGTCACCACTGCCATTTCGATCTGGAGGGCGCTGCATCACTGACAAGGCTGCGGATTCTAAGAGAATGCAGGGAGAAAACACAACTGACTGCCATTGCCAACCCAGAGCACCATGCCTTACAGCGAGACAGTTTGCTTTTTAAATGAGTTACATTCCCAGCAGACATAGCCGCCTCCTGCTCCCTCCCACTCCTGCAAGAATAAAGCAAGCAAGAAAAGAGAATCCAAGTTCCATCTGGCTGCTGCATTCTTAGGTGACTTACATGTGGAAGGTGCCAAGAATGAGAAGCGAAGGTCATGCAGCAGCAAAGAGGACAGCTTCATAAGTGAACTGCAGAATATTTGAAATGATACCTTAGGTGTAGTCATGAAGATATTAGCACTTTTATGGTTTGGGTCCCATTGTTTTCTTTTTGTTTGGGGGGATGTATTTTGAACTGTGAATCTAACATTTTTAAAGGGTTTTTGAAAAATGTTGAGGTTTTCTTTGTTATTTCAACAGGAATTGCAGGAATGTTGAGTGGGTTTATTGAATTTCAATGAAGAGAGAAAATACAGAACAAAAAATATTAAATGCTGGTCAGATGAACTGGAGAGTAGATAACAAAATTGGTGCAAGCTGTATAAATCTGCTTTTAGAGTAAGCTATATCAATCACAGTGCTATATTATCGTTATAATCTGATGTACAGTACTTCTGCCTTTTGAATTCTGTAATGGCTCTGCTTTTATTTCCACATGAAGGTTTTAGTGTCCCCAGTTCAGAAATGTATGCTCAGAAATGGAGTTGGCTGACTTTTTATTTTCTTATTCTCAGAGGTTGCAGTAAGGAGCTCTTACGTTTTAATTGTACCAGTGTTGCATTGATGACAATTAACAATTTCTTTTGCTGTAGCTGTCAACACATTGGAAGAAATAGAAGCTTCTTCGCAGGATGTCTTATTTTGAACATACTATACATTTTAGAGGGGTCTGTCATTTATATTTGATGGTAAATTTATCACTGTTGGATCCATGTTTGCTTTGGGCCATAGATCCTGGTGGAAAATGCCATAAAGGGAACAGATCAGACATTTTTTAAATCATCATCATTTCTGTGTTCCCTTGATTTTGTTTTGAGATTACATATTTTAGGTGGTATGAAAATCATCCATGTGCAAATGTTCTCCTCTTAGATGCCATGGCGTGCTCTGGATAAGGCAGAAAATTTACCTCATGAGAACAGAGAACATACGCTGCATATACAGAATATGATAATGCCACGAACTAAGTGACTTTAGATCACTGATTTTCTGCAGGCATTGGTCAAGGGAGGGCAGCAGAAAAGAATAGGAACCAAATATCTCACTAGTAAGCATCAGAGGGCTTTTGCTGATTTTGTTTGGTTGCCACATTTAATTCTAAATAAGCTCCTAAAAATGGTGTGACTGGAAAGCACATTTTTGAGCCTAGCGAACATCATTTGGTGTTTTCAGTGCCTGCCATTTCCTTTGTAATTAAAAAGGGGAAATATCCAACAACCTTGCCTCACCCAAAATATTACTGTAATAGTAAGCATTTGAAGTTTTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTTGACTCCTGGGTCTA
R:
GAATGCAGCAGCCAGATGGAA
Band lengths:
358-1754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]