GgaINT0010696 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2606358-2608542:-
Coord C1 exon
chr20:2608446-2608542
Coord A exon
chr20:2606381-2608445
Coord C2 exon
chr20:2606358-2606380
Length
2065 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGA
5' ss Score
3.51
3' ss Seq
AGATGAGACTTCAGGAACAGCAG
3' ss Score
-8.65
Exon sequences
Seq C1 exon
CGGAGAATCTGGTGCTGGTAAGACTGTAAACACCAAGCGGGTCATTCAGTACTTTGCCATTGTCGCAGCCTTGGGCGACACACCGGGCAAGAAAGTA
Seq A exon
GTAAGACCTTCTTTTGAAAGAAATTCTTGCTGTTTTCTTCCTTCCTGTTTTTTTTTTTTTAATTCTTTTTTTTTTTTCCCCTTTCTCCCTTCCCCCTTTCTTCTTTTTACTTCTTCTTCTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTCTTCTCTCAACTTTTTGCATTTGGAAACGTGTTTTGGTCTGACCCACCCAGGGCTTGGCTTTTCCCTGACTTTTGAACAAGCAAGGCTTGAAACTATCTTGCTCAGGGGGGAATGGATTTTTTTAAGCGTCTGCTCAGTCTGAGCAGTCTGGAAGAGGCACTTCAGATGCTCTCTGTATCTTCTCTTCCTTCTTCAACACCCCACCGATCTTCTTACGGAGCTCAAAAGAAATGGAGTAAACCTGCCATGTCCCACCTTGGCTCTTTTAAGCCTTGCTTTTCGTCCTTTTCTCCTCTTTTTTTTTTTCCTTTGTTGATTTTGACCCTTTTCTACCTTGTGCTTTTCTTGCTCTTGTTTTGATTCTTTGGTGCTGGTTATTTTTGAGCTGCTCTTGCAATTGCTTCTTTCTTCTTGACACATTGAGGCTCCAGCCTGCTTTCCCCCTATAGAAGCAAACTGGCTGCTTTAGGTATCAGACAAACAATACCTCAGTATTTTCTTTACTCTCACTTGGTTTGGATTTAACTGTTTCTTGCTTTTTGATGCATTTCTTCATTTTCTTGAGCTAATCTATTTAACAACTTTTTGGCATATCTTAAAAAGTTTAATCCTCCCATTTTTTCTTGGGCCGTTTTTGGCACTAAATGGCCGTGTCCTGCTTTTCTGACCGTGCTTCTTGTGATTCTTGCCTGGCTCTTCTGGATTTCTAAAGACGATTTTCTTTCCTTTCTTTAGGCAGCTCTTGCCACTAAAACTGGGGTAAGTGTTACAGGCTCTTAATCTTTAATGCTGAGGACAGGGTTCTGCTGCAGTGGAGCTATGGTAGGGTGATAGGGAATGCCAGTGCAACAGTCATGGCTCAGCCATTGTAGCAGCTCACATGTATGCCATTGGCTCCCAGCTTCTCTTTTGGAGCACCAAGGGGCTGCATTTAGCTTATACACATTGCCAACTGCATTCGTGCCCCTTTGGGTGGGAAATACTCATTATAATGTGAAGCTCAGCCCATTCAGGAAAGCTATTACTAAGAGCCAAACAGTCGGAGGGCTGAGCGTGTGGGTCTTGGGGTGGTCCATGGGCAGGCAAGGCAATTTTAGATTGGGCTAAACTTAAAGACAACAGATCAAAGGATATCCAAGGGAAAAATTCAGCTTGCTACTAAATGATTCACAGCTGCTGTCTCTTTTGCCCTTTACATGCCCGGAGCTGCAGAGGCAGGGCGCAGCCATACCCCAGATGTGGTGGTTAGCACCCAGCAGCAGAGCAATGGGAGCTGACGTGGTGTCAGGGTGTGGGCACTGAAAGGCTCTTGCATGGAAAGTGCCACTGTTGTCAGACCCCACTGTCCTTCGTGTGGCTTGGCACAAGTCTCTTGTATCTCTCTTCTAATTCTTGTCCTGCTTTGCCTGTGTTAGGTGGTGGTTGCCTCTGTCTCTTTGAACTACATGTATGAAACATACTATGAACTATGTGTATGAAGCATGGTTATGGAGCTGTTAATCTTGAAGTTTGCTCCAAAGAGATGCAGGGAAGTCAGCAGATCATGCCAGCTGGGAACCATGATGTGTCCCTGTCACGCTGTGGCCCTGCCATGCATTTGGTCGGTGCAGGGAGCTAAGCCTCTTTTCTGCATCTCTTCATTCACGATGCACTGTCACTTGAACTGTCCAAGACCCTGATTTTGTGGAAGGGGAAACACCTGGCAGAACCTGAAACGCTTTGGACTGTTGTGACAACGTATGCTTGCTCTTGGTTTGCATGTTGTAGCAGCCTACAAAGGGAGTGAAGGACTTCTGGGTGCAGTTCAGGCAAGGGGAATCCCAGAGAGAACATTACTGCAAAATCCAGCTCTGCTGACTCCAAACCCATCTGCATCCCCTCATGAGACAAGATGAGACTTCAGGAACAG
Seq C2 exon
CAGGCTCTAAAGACAGCTAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]