BtaINT0097387 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64892633-64893837:+
Coord C1 exon
chr13:64892633-64892729
Coord A exon
chr13:64892730-64893825
Coord C2 exon
chr13:64893826-64893837
Length
1096 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
ATCGTGGATTTGAGGTTTAGGGG
3' ss Score
-2.74
Exon sequences
Seq C1 exon
GGGAGAATCGGGGGCCGGTAAGACCGTTAACACCAAGCGGGTCATTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCT
Seq A exon
GTAAGACTTGCCCACGCGGGCACTGCTCCCTGCTGCTTCTCACTGTTTTCTTTTCTTTTTTTTTCTCCTTTTCTTCTTTTTTTTAAAAGTTGATTCCCCAGAGCCGCTCGCCCTGCCTGAGCCTCCCACCCTGGTGGCAGACTCTGGCCCGAGCAAGGCTTGACCAGAGAGGCTGTGGCCATTCTCTGTCACGTGACGCAGATCCAGGCTTGCCTTACTGTTCCCATCTGAAATGCAGAGGGGCGGGACCACATTGCTAGTCCTCAACATTTCATGTAATTTTTCCCTTTCATATTCTCACGACCTTCATATTTTAAAAGTTTACCAAGCAAGCTGTTTTTTACCAAGAAGTAATAATCGGTTTCTTGGTTTTCATGCTCCAGTTACCTGCTGTCAATCAAACAAGGCAGGTTTAGCCAGAGCCAAGGGCACTTGGCCTTCCCAACAGTCAAGATTAAGGGCAGTTTTGCACCCTATGATTTCTTTATGGTTTTTGAAATTTTCTGAAACAATGGGGGACCAGTATTTTGGGGTTTTTTATTTGTTTTCAAGGTGCAGTTTTCCTTCCTAGCCCTATGGCCAGCTGTTTAGAGATGTGTGGGCACTGCACCCCCACCCCCAAATGGGTTGACTTTTCTTTCCAGAAGCCTAAGGCCTCCGCCCACCCAGCCCTCACTCCTGGTCTTGTTGAGCCTTGCTTTTATTCTGGGGCATTTTTCTTTCTTCTTTTTCTTATCTTTTTTTCCATTTAAAGTTTTTTTTTTTTTTTTTCCTTTTTCTTTTTGCCTTTTCCTGTTTTCCCATTTGATTTTCTTGTGATTTTTTTTTTTTTTTCCAGTTTTGGTTTTTTGTTGTGGTGGTGGTTGTTTTTCTTGTTTGGTTTTGTTTTTGCTGTTGACTTTTTTGGTACTCTTTCCTCCTTCCCCTCCACCTCATTTTCCAACTCCCAAAATGTCTCTGAGGATGCTACAGGAAGTTGGGGCTCGGTCCAGGAATAGGAATGGAGGGCGGGAGCTGATGGGGCTGCAGCCAGAATGGGTGAGTCTAGAGGGCACCTGGGCAGAAAGGAGCCCTGCATCGTGGATTTGAGGTTTAG
Seq C2 exon
GGGAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(0.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development