RnoINT0096584 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151130587-151132328:+
Coord C1 exon
chr3:151130587-151130683
Coord A exon
chr3:151130684-151132304
Coord C2 exon
chr3:151132305-151132328
Length
1621 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
CATTTTCCTTTTCCCTCCAGCAA
3' ss Score
9.63
Exon sequences
Seq C1 exon
CGGAGAGTCGGGGGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTATTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCA
Seq A exon
GTAAGACTTGCCCGCTTGGGCGCCAATCCCTACTGCTTCCCCCTGTTTTCTTTTTCTTTTTTTTTCTTTCTTTCTTTTTAAAATTGCAACCTCCCAGAGTCCCTCCCAGAGCCCCCAGCCCTGCCCGAGCCTCCTACCTTGGTGAGAGACTCTGGCCTGAGCAAGGCTCAACCAGAAAACCCATGGCCACCTCCGTCACTGTGTTATGCCCGAGCCAGACCCGAGCCACAGCTCCCGGGTGTTTTTGCATGTGTGTGACTTTTCCAGTGTGACCTTCATAATTTTTAAAGAGTTTACCAAGTAGTGTGCTTTTATCCGGAAGTGATTATTTTCTTGGCCCACATTCATCGAGGTCTCTGTTACCCGCTCCCAATGAGTGGAGCAGGCTGATCCATAGATGTTAATTACCCAGAGCCGAGGGCCCTGGGAATTCTTGACAGTTACATGGCCCGTGGTTTTGATTAAGATTTTTTTTTTTTTTGGTGAAACTTCTTAAACAATGGAGGCATGGTGGTTTTTGTTGTTTTTAATGTGACTGTCCCATCCCTGGCCCACAGGCCAGCTGTCTGTGGCTTCGGCTGACCCCCACACATCTACCAATGTGAGAGGACCCAGGCTCCCTCTGAGCGGCCTACACTCCTGGTCCTGTTGAGCCTTGCTTTACTCTGGGGCAATTTTCTTCTTTTTTTCTCTTCTTTTTTCCTTCTTGCTGTGTTTTCTTTCTTTCTTCTTCTTTTTCCGTTTGTTGTTTTGTTTTGCTTTTGATCTTTTGTCCCACCCTTCCCCCATCTCCTCACTTGATTGCCTTGATTTTGGATTTCGTTTGTTTTGGTTTTTGGTTGCAGTCATAGTTTTTGTTTTTGCTGTTGGCTTTTTGATATTCTTTCTTCCCTTCCTTTCCCACCATTTCCCAAGCCCTGAAAGGCCTTTGAGAATACTGTAGACAAGTAGGATAATCCTATAACAGGAAAAGAAGACAGAGCCCAAAGCTGAAAGGAACACAACTGGAAGGGCTGAGGCAGGAGAGTACCTACATAGGAAGGGGCTTTGATTCTGGAGTCAGGGCATAGGGGCAGCTCAGCAGAAAGTCACCCACAGGATTTGGGAGCTTCAAAGCTGTACTAATTCTCTCCCCTTGAGCTCGGATTTGGCTAACCTGGACAGAAAGAGTCTTGAACAAAAGCAGCTGATAAGTTGCATATGGAGGGCATGGGAGGAGGAAGGGGCAGAGATGGCAGAAGTCGCTGCACTATCCAAGATCAGGGAGGTCTTCCCAGAGGAGGAAGAGCTTGGCAGGCTGCTAAGGAGAGAGGACTCTAGTCAGGCTCCTTGTGTGGATGTGGATGATGAAGAAATTCCTGAGGAGGCAGAGACAGGAGACCCTAGTGCTGCCCCCTCCCCAAGCCCTCAAGATGATGCTTGCTTCCCCTGTCTAGCATCTCCCAGCTAATCAGCTGATCAGCCCATGAGCTCTAGGGGTATGGAGTCCTCCAGGGGAGAATGCTACGATTAACATTACTAAATATTTGGATAACTAATATACACTGTCCCACTACCATGCCAATGCCCCACCCTTACTCTGAAGACCTCACACCCTCTGACATTTTCCTTTTCCCTCCAG
Seq C2 exon
CAATTTCTGGCAACAAAAACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]