RnoEX0057058 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151129576-151132328:+
Coord C1 exon
chr3:151129576-151129603
Coord A exon
chr3:151130587-151130683
Coord C2 exon
chr3:151132305-151132328
Length
97 bp
Sequences
Splice sites
3' ss Seq
AGATGTTTGTGTTGTCCAAGCGG
3' ss Score
1.41
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
ACAGAGAGAACCAGTCCATGCTGATCAC
Seq A exon
CGGAGAGTCGGGGGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTATTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCA
Seq C2 exon
CAATTTCTGGCAACAAAAACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(1.0=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGAACCAGTCCATGCT
R:
CCCGGTTTTTGTTGCCAGAAA
Band lengths:
52-149
Functional annotations
There are 2 annotated functions for this event
PMID: 20154144
Skipping of an exon introduces a premature termination codon in the transcript that downregulates MYH7b protein production without affecting microRNA expression. Among other genes, endogenous miR-499 targets the 3' untranslated region of the transcription factor Sox6, which in turn acts as a repressor of MYH7b transcriptional activity. Thus, concerted transcription and alternative splicing uncouple the level of expression of MYH7b and miR-499 when their coexpression is not required.
PMID: 34227390
In mammals, MYH7b mRNA is transcribed but undergoes non-productive alternative splicing that prevents protein expression in a tissue-specific manner, including in the heart. However, several studies have recently linked MYH7b variants to different cardiomyopathies or have reported MYH7b protein expression in mammalian hearts. By analyzing mammalian cardiac transcriptome and proteome data, the authors show that the vast majority of MYH7b RNA is subject to exon skipping and cannot be translated into a functional myosin molecule. Notably, the authors discovered a lag in the removal of introns flanking the alternatively spliced exon, which could retain the non-coding RNA in the nucleus. This process could play a significant role in controlling MYH7b expression as well as the activity of other cardiac genes. Consistent with the negligible level of full-length protein coding mRNA, no MYH7b protein expression was detected in adult mouse, rat, and human hearts by Western blot analysis. Furthermore, proteome surveys including quantitative mass spectrometry analyses revealed only traces of cardiac MYH7b protein and even then, only in a subset of individual samples.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]