RnoINT0096583 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151129576-151130683:+
Coord C1 exon
chr3:151129576-151129603
Coord A exon
chr3:151129604-151130586
Coord C2 exon
chr3:151130587-151130683
Length
983 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
AGATGTTTGTGTTGTCCAAGCGG
3' ss Score
1.41
Exon sequences
Seq C1 exon
ACAGAGAGAACCAGTCCATGCTGATCAC
Seq A exon
GTGAGTGGGGCTCTGGGCATCAAGTGGCGAGTGATAGCCACTTGATAGCGGTGGTCCGGTGAGGGGTGGGGGATCAAAGTTAATTCTCAGGATTGGATCCAAAATGCTTAGGTCAGGGCCCTTACCTGGTGGAGTCAATGTCCTCCCTGGCTCCCTGTGTGTGTGTGGGGGGGGGGGAGTAGAAGGCAGGTATTCAAACGTGGGTGTGACCTCAAGCTCCTTGTGTCTCTCCTGAGATCTGGGCATCTCCCACCTGGTCCTTTGGAGGCTCTAAATAGGTCCTTTGGAGGTTCTAAATAGGTCCTTTGGAGGTTCTAAATAGGTCCTTTGGAGGTTCTAAATAGGTCCGTCTCATCACTGCATCTCAGCCCTCAACCTTCACTAGCCTTCATGGGAAAGGTCTCCATCTCCGATGTACTGAGTCATGTCCAGTCAGGCCAATACACACACATGCACACAGGGACGCGCGCGCGCGCGCGCGCACACACACACACACACACACACACACACACGACCATAGGGTATTAAGACCAAGTCCTCTGAAGCCAGACTGAGCTGGATCCAGGCGCTCACACTCCCATATCTTGCTGTGTGCCTCTGGGCCCCCGAATCTCAGCAATACAAACAGAGCAGCCTAGCCTGCCACACAAGACTGCCAGCAGTTAAGTCTGTTAAGCCTTGCACAGAGCAGAGGCAGGCCCAGAGCTTCTGAGGCCCATTTCCTTACCCATAAGACGATCATGTCTACCTTCCCTGGCCTTCTCATGGAGGTGGGGTACCTGGCATGGCTCCCGGAGCTAAGTCGGTACTCGGTTTTCGGTGGTAAGTCAACATCATCATCTCAGAGAGTCTGTACCTGGGAGTTTGGATCTGGGGACACTGAGTTGGGAAGAGATGGTGGGGAGGGTTGAGGTTTGGGGGAGGGGGCTGGGAGAATTAGGGAGACAAATGGGCTTTAGTGACAGATGTTTGTGTTGTCCAAG
Seq C2 exon
CGGAGAGTCGGGGGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTATTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]