HsaINT0107918 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33568836-33570358:+
Coord C1 exon
chr20:33568836-33568863
Coord A exon
chr20:33568864-33570261
Coord C2 exon
chr20:33570262-33570358
Length
1398 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TCATGTTTGTGTCGTCCAAGCGG
3' ss Score
3.01
Exon sequences
Seq C1 exon
ACCGAGACAACCAGTCCATGCTGATCAC
Seq A exon
GTGAGTGTGGGGCTCTGGGGGTGGGGTGGAAAATGCTGGCCATCTGGCAGAAAGAGGGCGGTACCACAGTCATTTCCCAGGATTGAATCCAAAGTGCTTAGGCCAGGACTTTTACCACCTGGAGCTAGTGTCCCAGCTGAAGCTAAATTAGGCCTGAGCACTTTCCCTGCCCCCATTCTGAACAGATGTGTTCTTGATGGGGGATAGGGAGGGGACACCCACAAACGGAGTGACCACCAGCCCCACACCTCCTCTCCCCGGGGCCTGGAATCTCCCACCTTGATCCTCTGGGGTTCTAATTCTGGCTCAGGGGCAGCGGAAAGATTCCTCTGCTTTTCCTCCTTTTTACCATCTACTTATGTCTGAATCTTACCTCTGATCTTTCCATTGCCTCTGTGGGAAAATGGTAGAATAATTCTTACATGCCAGGCTCATGTCCAGTCAGGCCAATATGGACAATGTTTAGTGTGAGTGTGCATGCGCGTATGCAGTTAAGAGCAAGTGCCTTGGCCGGGCACAGTGGCTCATGCCCGTAATTTCTGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGACGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCCGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCCACAGAATGAGACTCCATCTCACGAAAAAAAAAAAAAAAAAAAAAAAAGCAAGTACCTTTAACCCAGACGGGCCCGGCTGAGTGTGGTGGCTCACACCTGTAATCCCAGCACTTGGGGAGGCTGAGGCAGGAGGATTGCCTGAGGCCAGGGGTTTGAGACCAGCCTGAGCAACATAGCGAGACCCCATCTTTACCAAAAAAAAAAAATTGAAAAGTTAAATAAAAAATCCTACCTACCACACAAAGTTATGAGTCAGTGAGTTGATATATGTGCCTGGCACACAGCAGGGACAGCCACAGAACTCCTGAGGCCCAGTTCCTTGTTCCTAAAATGGGGGTGATAATGGAGCCTGCCTTCCAGGGTTTTCTGAGCTGTAACTGAGCCAATGGAGTAAAGTGCCGGGCACTGAGTTAGTCCGTAGTGGACAATGGCATCATCGTGTGTTGTCATCTCACAGGGATGGTCTACACTGGCTTGCTTTGTACACCTCTGAGGGTTGATCCATCCTTGGGGGTTTCAAGCTGGGGGGAAGGAGAGGTGGAGGGCTCTGCTTGAGGGGTGAGGCATTGGGGGTGGGGGAGAATTAGGCCAGATGGGCATTGGTGACTCATGTTTGTGTCGTCCAAG
Seq C2 exon
CGGAGAGTCGGGGGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)