MmuINT1023818 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155614468-155615497:+
Coord C1 exon
chr2:155614468-155614495
Coord A exon
chr2:155614496-155615400
Coord C2 exon
chr2:155615401-155615497
Length
905 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TGATGTTTGTGTTGTCCAAGCGG
3' ss Score
2.93
Exon sequences
Seq C1 exon
ACCGAGAGAATCAGTCCATGCTGATCAC
Seq A exon
GTGAGTGGGGCTCTGGGCATCGAGTGGCCAGTGCTGGCCATTTGATGGTGGTGGTTGGGGGAATCAAAGTTAATTCTCAGGGTTGGATCCAAAGTGGTTAGGTCAGGGTCTTTACCTCCTAGAGCCAATGTCCACCCTGACCTCCTTTATGTGGGGAGGAGGGGGTAGAAAGCAGATATTCAAACATGGGAGTGACCCCAAGCTCCTTGCCATCTCTCCTGAGATCTGGGAATCTTGACTCTTTGAGGTTCTACATAGGTTCTCTGCCTTTCCTCTCACCTCATCTCTGTATCTCAGCCCTCATCCTTCCTTAGCCTTCATGGGAAAGAGACCCATTCCATATGTATTGAGTTCATGTCCAGTCAGGCCAATACATGCATGGACACGTGGATAAACATGAGCACTCACATGCACAAGTGTAGGTTATTAAGAACAAGCCCTCTGAAGCCAGATAAAGCTGGATATAGGCATTCACATTCCCATTTCTTGCTGTGTGCCTTTGGGCCCCTGAACCTTGCCAATACAAACAGAACAACCTAACCTGCCACACAAAATTACCAACAGTTAAGTCTGTTTAGATGTGAACCTTGCACAGAACTGAGACAGGTTCAGCGCTTCCGAGGCCCATTTCTTTATCCATAAGATGGTGATAGTCTACCCCTCCCCGCCTCCCCAGGTCTTCTGATGGAGGTGGGGTGCCTGGATTGGCACTGGGAGCTAAGTTAGCACTCAGTTCTCAGTGGTGTGTTGGCATTGTCATCCCACAGAGCGGTCTGTACCTGGGAGTTTGGATCTGAGGATACTGAGTTGGGAAGAGAGGTGGTGGAGAGAGGCTCGAGCTCTGGGGGGCTGGGAGGATTAGAGAGACAGATGGGCTTTGGTGACTGATGTTTGTGTTGTCCAAG
Seq C2 exon
CGGAGAGTCGGGGGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types