HsaINT1024132 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34981033-34982555:+
Coord C1 exon
chr20:34981033-34981060
Coord A exon
chr20:34981061-34982458
Coord C2 exon
chr20:34982459-34982555
Length
1398 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TCATGTTTGTGTCGTCCAAGCGG
3' ss Score
3.01
Exon sequences
Seq C1 exon
ACCGAGACAACCAGTCCATGCTGATCAC
Seq A exon
GTGAGTGTGGGGCTCTGGGGGTGGGGTGGAAAATGCTGGCCATCTGGCAGAAAGAGGGCGGTACCACAGTCATTTCCCAGGATTGAATCCAAAGTGCTTAGGCCAGGACTTTTACCACCTGGAGCTAGTGTCCCAGCTGAAGCTAAATTAGGCCTGAGCACTTTCCCTGCCCCCATTCTGAACAGATGTGTTCTTGATGGGGGATAGGGAGGGGACACCCACAAACGGAGTGACCACCAGCCCCACACCTCCTCTCCCCGGGGCCTGGAATCTCCCACCTTGATCCTCTGGGGTTCTAATTCTGGCTCAGGGGCAGCGGAAAGATTCCTCTGCTTTTCCTCCTTTTTACCATCTACTTATGTCTGAATCTTACCTCTGATCTTTCCATTGCCTCTGTGGGAAAATGGTAGAATAATTCTTACATGCCAGGCTCATGTCCAGTCAGGCCAATATGGACAATGTTTAGTGTGAGTGTGCATGCGCGTATGCAGTTAAGAGCAAGTGCCTTGGCCGGGCACAGTGGCTCATGCCCGTAATTTCTGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGACGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCCGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCCACAGAATGAGACTCCATCTCACGAAAAAAAAAAAAAAAAAAAAAAAAGCAAGTACCTTTAACCCAGACGGGCCCGGCTGAGTGTGGTGGCTCACACCTGTAATCCCAGCACTTGGGGAGGCTGAGGCAGGAGGATTGCCTGAGGCCAGGGGTTTGAGACCAGCCTGAGCAACATAGCGAGACCCCATCTTTACCAAAAAAAAAAAATTGAAAAGTTAAATAAAAAATCCTACCTACCACACAAAGTTATGAGTCAGTGAGTTGATATATGTGCCTGGCACACAGCAGGGACAGCCACAGAACTCCTGAGGCCCAGTTCCTTGTTCCTAAAATGGGGGTGATAATGGAGCCTGCCTTCCAGGGTTTTCTGAGCTGTAACTGAGCCAATGGAGTAAAGTGCCGGGCACTGAGTTAGTCCGTAGTGGACAATGGCATCATCGTGTGTTGTCATCTCACAGGGATGGTCTACACTGGCTTGCTTTGTACACCTCTGAGGGTTGATCCATCCTTGGGGGTTTCAAGCTGGGGGGAAGGAGAGGTGGAGGGCTCTGCTTGAGGGGTGAGGCATTGGGGGTGGGGGAGAATTAGGCCAGATGGGCATTGGTGACTCATGTTTGTGTCGTCCAAG
Seq C2 exon
CGGAGAGTCGGGGGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains