DreINT0099906 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24972201-24972550:-
Coord C1 exon
chr11:24972523-24972550
Coord A exon
chr11:24972298-24972522
Coord C2 exon
chr11:24972201-24972297
Length
225 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
CCATTTCTTGATACTCCTAGCGG
3' ss Score
3.33
Exon sequences
Seq C1 exon
ATCGTGAGAATCAGTCCATGCTAATCAC
Seq A exon
GTAAGTTTGAAAAATACCCATATACACATTCTGCATTGCTGTTGCGTTGAGACATTTTCAGAGTGGAAAAAACAAAAAATAAATTCATAAGTTTTTGCAGTTGCGATATTGTATTTTCTTAAAAGAAGATTTTGTTGCTCTGTTTTTTTTTAAGCTGTGGTATTTTCCTTTTTTAATCTTGTTTTTCAAATGTCTCATCACTGAACCATTTCTTGATACTCCTAG
Seq C2 exon
CGGAGAATCTGGTGCTGGCAAAACAGTAAACACGAAACGTGTAATTCAGTATTTTGCCATAGTAGCGGCCCTGGGTGAGGCAGCGGCTAAAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]