MmuINT0103642 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155441137-155443283:+
Coord C1 exon
chr2:155441137-155441233
Coord A exon
chr2:155441234-155443259
Coord C2 exon
chr2:155443260-155443283
Length
2026 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
CACTTTCCTTCTCCCTCCAGCAA
3' ss Score
10.38
Exon sequences
Seq C1 exon
CGGAGAGTCGGGGGCCGGTAAGACGGTTAACACCAAGCGGGTCATTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCA
Seq A exon
GTAAGACTCGCCCACTCGGGCACCAATCCCCACTGCTTTCCCCTGGTTTTTTGTTTTGTTGATGGTGGGTTTTTTTTTTAATTTTTTCCTTTCTTTTTAAAATTGCAACCCCCCAGAGCCCCAAGCCCTGCCTGAGCCTCCTACCTTGGTGGGAGTCTCTGGCCTGAGCAAGGCTCGACCAGAAAACCCATGGCCACCTCTGTCACTGTTAGACCTGAGCCAGACCTGCTACAGCTCTCCCTGGAACCACACAGACGGGAGCCACATCACTGCTCCTGGATGCTTGTGTGTGTGACTTTTCTGTTGTGACTGTCATTCTTCTTAAAGAGTTTACCAAACAGGGTGCTTTTATCTGGAAGTGATTATTTTCTTGGGCCACATTCATCAAGGTCTCTGTTACCTGTTCCCAATGAGAGGAGCAGACTGATCCACAGACGTTAATTACCCAGAGCTGAGGGCACTGGGAATTCTCCACTGTTGCATGGCCCATGGTTTTGATTAAGATTTTTTTTGAAACTTCTTAAACAATGGAGACATAGTGTTTTTTTTTGTTTGTTTGTTTGTTTTCAATGTGACTATGCTATCCCTGGCCCAAAGGCCAGCTGTAGAGAGCTCTGTGGCTTTGGCTGACCCCACACATCTACACCGACATGAGCGGACCCAGGCGTCCTCTGCTCGACCCACGTTCCTGGTCCTGTTGAGCCTTGCTTTATTCTGGGGCAACTTTTTTTCTTTTTCTTTTCCTTTTTCTTTTCCTTTTCCCTTTCCTTTTTCTTTTTCTTTCTTTTCCTTTTCCTTTTTCTTTTTTCTTCTTGCTGTGTTTTCTTTCTTCTTTTTCCATTTGTTGTTTGTTTTGTTTTGTTTTTTGTCTCTTGTTCCCCCCCACCCCAGCCTTTTCCCCATTTCCTCACTCGATTGTCTTGATTTTGGATTTTGTTTGTTTGGGGTTTTGGTTGCAGCCATAGTTTTTGTTTTTGCTGTTGACTTTTTGAGATTCTTTCTTCCCTTCCTTTCCCACCATTTCCCAAGCCCTGGAAGGTCTTTGACGATACTGTAGACAAGTAGGGTAACCCTGAATCAGGAAAAGAAGACAGAGCCCAAATCTGGCAGGAACACACCTGGAAGGGCTGGGACAGGGGAGTACCTGCATAGGAGGGGGCTATGATCCTGGAGTCAGGCTATGGGGGCAGCTCAGCAGAAGGTCACCCACAGGATTTGGGAACTTAAAAGCTGCACTGACACCCTCCCTCTCCTGGAGCTCAGAGTCGGCCAACCCAGCCAGAAAGAGTCTTGACCAAAAGCAGTGACTGTGAGTTGCACAGGGAGGGAAGAGGCCCCTCTTCCACTTCTCAGCAATGTGTTGGGTGCTTTCTTAAGTCTCGGAAGGGGGAGGGGGAGGGGGAGAATAAAGCTAGGAGGGGAGAAAGGAGTGTGGACTCTAGGTAATGTCCTTGCTCTGACAGAGCTCAGCACACGCAGCTGGAAGGGCTGTCTTGGGTAGCAGTCCACATGCCGTGCTGAAGACATAAGTATGGGACATAAGACATAAGAAGACATAAGACCGGGAAAGTATGAAGGGACCTCCAGGGCGGTTGGGGGAGGGCTTGAAGTCGCTGCACTATCAAAGATCAGATCAGGGAGGTCTTCCCAGAGGAGGAGGAGCTTTGGTGGGCTGGGCCGCTAAGGAGAAAAAACTCTAGTGTGCCCCTAGTGCAGATGTGGACAATGAAGAGATTCCTGAGAAGGCAGAGACAGGGTTGGGCTTGGAACACAGGAGACTCTAGTGCTGACCCCCTGCCTCAAACCCTCAAGATGGTGCTTGCTTCCCCTCCCTCTCTAGCATCTCCTAGCTAATCAGTCCAGGAGAGCTAGGTGTATAGAGTGCTCCAGGAGAGAATGTTACGATTAACATTACTAAATATGTAGGTGGTGACTAACATACACTGTCCCACTGACTACCCTCCCAATGCCCCCACCCTTACTCTGAAAGACCACACACCCTCTGACACTTTCCTTCTCCCTCCAG
Seq C2 exon
CAATTTCTGGCGACAAAGACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: