GgaINT0010720 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2591484-2591776:-
Coord C1 exon
chr20:2591636-2591776
Coord A exon
chr20:2591588-2591635
Coord C2 exon
chr20:2591484-2591587
Length
48 bp
Sequences
Splice sites
5' ss Seq
CGTGTGGCT
5' ss Score
-8.09
3' ss Seq
GCTGGGGAGCTGTGGTTCAGCTG
3' ss Score
-3.38
Exon sequences
Seq C1 exon
GCCAATGCTGAGAAGCTGTGCCGCACCTATGAGGACCAACTGAGCGAAGCCAAGTCCAAGGTGGATGAGCTGCAGCGGCAGCTGACTGATGTGAGCACACAGCGGGGCAGGCTGCAGACTGAGAATGGTAGGTGGGGACGT
Seq A exon
GTGGCTGTTTTTGCGCTGGGGCATCTGAGCTGGGGAGCTGTGGTTCAG
Seq C2 exon
CTGTGCAGGCTGTCCAGCTCCTCCCAGGGGCAGATGTCAGTGGAAGCTCCATCTGGAGCAAAGGGGATTGGAAGTCTGTGGCGTGCCTCTGCTCAGGCAGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.514
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(35.1=100),PF0076914=ERM=FE(31.5=100),PF071068=TBPIP=FE(44.7=100),PF041569=IncA=PD(39.8=91.5),PF078886=CALCOCO1=FE(45.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(9.9=37.1),PF0076914=ERM=PD(19.9=82.9),PF071068=TBPIP=PD(1.9=5.7),PF078886=CALCOCO1=PD(7.9=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTGGATGAGCTGCAG
R:
GAGCTTCCACTGACATCTGCC
Band lengths:
135-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]