DreINT0099891 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24955673-24956223:-
Coord C1 exon
chr11:24956097-24956223
Coord A exon
chr11:24955792-24956096
Coord C2 exon
chr11:24955673-24955791
Length
305 bp
Sequences
Splice sites
5' ss Seq
GCGGTACAC
5' ss Score
2.99
3' ss Seq
ATAATTTATACTTTATACAGCTG
3' ss Score
5.14
Exon sequences
Seq C1 exon
GCTACTGCTGAGAAAACCTGTCGCCTTTATGAAGACCAGATGAACGAGTCCAAAGCCAAAGTGGAGGAGCTCCAGAGGCAGCTCAGTGACACCAACACGCAGCGAGCCCGTGCTCAGGCTGAAAGCG
Seq A exon
GTACACCAGCAAATCAAACCAATGCAATATTAAAGAGACAGTTAATAGATAAAAATTCTACCATCATTTACTTACCCATGACCTTTCACCATTGACATCCATAGTAAGTAAAACAAATAGTATAATAACCTGTAATGTAAGTTACAAGTTTCCAACATTCTTCAAAAAACTGGTTTGAAACAAGTAGAGGTTGAGTAAATGATGACAGAATTTTCATTTTGGGGCGAACTACGCCTCTAAGAGACAACTAACCACAGACTAACTTTGAGCATTTTTAAAAAATATATAATTTATACTTTATACAG
Seq C2 exon
CTGAGCTTGGCAGAAAGCTGGAGGAGCGTGAAGCTCTGGTGTCTCAACTGCAGCGCAGCAAAAACACCTTCAGCCAAAACATTGAGGAGCTGAAGAAACAGCTAGAAGAAGAGAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.850
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100),PF059116=DUF869=FE(27.5=100),PF0003816=Filament=PU(24.2=69.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF059116=DUF869=FE(25.5=100),PF0003816=Filament=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTGCTGAGAAAACCTGTCG
R:
TTTGCTCTCTTCTTCTAGCTGT
Band lengths:
246-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]