GgaINT1018574 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2946883-2947569:-
Coord C1 exon
chr20:2947443-2947569
Coord A exon
chr20:2947002-2947442
Coord C2 exon
chr20:2946883-2947001
Length
441 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTGGCTCTGTTTGAAACCAGGGG
3' ss Score
5.12
Exon sequences
Seq C1 exon
GCCAATGCTGAGAAGCTGTGCCGCACCTATGAGGACCAACTGAGCGAAGCCAAGTCCAAGGTGGATGAGCTGCAGCGGCAGCTGACTGATGTGAGCACACAGCGGGGCAGGCTGCAGACTGAGAATG
Seq A exon
GTAGGTGGGGACGTGTGGCTGTTTCTGCGCTGGGGCATCTGAGCTGGGGAGCTGTGGTTCAGCTGTGCAGGCTGTCCAGCTCCTCCCAGGGGCAGATGTCAGTGGAAGCTCCATCTGGAGCAAAGGGGATTGGAAGTCTGTGGCGTGCCTCTGCTCAGGCAGTGCAGTAGTGTTGTACGGTGTGGCAAGGGTGAGAACTTCTGTAGCAATGCTGTTTTTTATTGGTGCTGGGTGGGGTGTACGGTGATCTCAGGCATCAGGAGGGGGCTCTTAGCTGTCACACTTAGCCATTAGCTTCTGAGGGGCACAGCTTGCCTGACTGGGGATACAACTGGCTTCTGGAGGTCTCCACACAACTGAAGGCCACAAGATGTGTGCAGGTGTGGGCTCATGCATGGGTGTCCAGCCCCAACACAGCTGTTTGGCTCTGTTTGAAACCAG
Seq C2 exon
GGGAGCTGAGCCGACTGCTGGAGGAGAAGGAGTCATTCATCAACCAGCTGAGCCGTGGCAAGACCTCGTTCACACAGACCATCGAGGAACTCAAGAGGCAACTGGAGGAGGAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100),PF041569=IncA=FE(34.1=100),PF0003816=Filament=PU(12.5=65.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF041569=IncA=PD(10.6=32.5),PF0003816=Filament=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGCTGAGAAGCTGTGC
R:
CTTGGTCTCCTCCTCCAGTTG
Band lengths:
246-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]