RnoINT0096569 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151146471-151146807:+
Coord C1 exon
chr3:151146471-151146597
Coord A exon
chr3:151146598-151146688
Coord C2 exon
chr3:151146689-151146807
Length
91 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GCCCGCCCCTTCACCCGCAGGGG
3' ss Score
11.11
Exon sequences
Seq C1 exon
GCCAGTGCAGAGAAGCTGTGCCGGACCTATGAGGACCAGCTCAGCGAGGCCAAGATCAAAGTGGAGGAGCTGCAGCGGCAGCTGACTGACGCCAGCACCCAGCGGGGGCGGTTACAAACGGAGAACG
Seq A exon
GTGAGGCCTGGGTTTAGCTGGGCTATGCCAGGTAGGGCTTGGGTGGTTTGCCTCAACGGACTGACCGGCCTGCCCGCCCCTTCACCCGCAG
Seq C2 exon
GGGAGCTGGGCCGCCTGCTTGAGGAGAAGGAGTCTATGATCAGCCAGCTGAGCCGCGGGAAGACCTCAGCCGCTCAGAGTCTGGAGGAACTTCGGCGGCAGTTGGAGGAAGAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.850
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(15.0=81.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAGGCCAAGATCAAAGTG
R:
AGTTCCTCCAGACTCTGAGCG
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]