GgaINT0010722 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2591090-2591279:-
Coord C1 exon
chr20:2591243-2591279
Coord A exon
chr20:2591238-2591242
Coord C2 exon
chr20:2591090-2591237
Length
5 bp
Sequences
Splice sites
5' ss Seq
AGCCCCAAC
5' ss Score
-33.8
3' ss Seq
GCATGGGTGTCCAGCCCCAACAC
3' ss Score
-12.6
Exon sequences
Seq C1 exon
ATGTGTGCAGGTGTGGGCTCATGCATGGGTGTCCAGC
Seq A exon
CCCAA
Seq C2 exon
CACAGCTGTTTGGCTCTGTTTGAAACCAGGGGAGCTGAGCCGACTGCTGGAGGAGAAGGAGTCATTCATCAACCAGCTGAGCCGTGGCAAGACAAGGTTCACACAGACCATCGAGGAACTCAAGAGGCAACTAAGGGGGGAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(4.8=54.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGGGCTCATGCATG
R:
ACTCCTTCTCCTCCAGCAGTC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]