BtaINT0097293 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30087651-30088306:-
Coord C1 exon
chr19:30088180-30088306
Coord A exon
chr19:30087770-30088179
Coord C2 exon
chr19:30087651-30087769
Length
410 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CCACATTCTGTCTCTCACAGGTG
3' ss Score
10.99
Exon sequences
Seq C1 exon
GGAAACCTCGAGAAAATGTGCCGTACACTAGAGGACCAACTGAGTGAAGTGAAAAGTAAGGAAGAGGAGCACCAGCGCCTAATCAATGAACTGTCAGCCCAGAAGGCACATCTACACACAGAGTCAG
Seq A exon
GTCAGTGAACGAGGAGGGCCTGGAGTGCAGGGTACACCTATCAAAAGGGAATCATTTCTTTGGCCATGTACACCCCTTTATCATTGATATGTTATTCCTCCATCTTTTTACTGTGAGACAGTAGGTTGATTACAGGTTGTAATCAGAAAAAAATTTAATCTCAATGGGCTGAAGAGATTTTTTTTTTTTGCCTCAGCATTACTCAAAACACCCTCCTCAACCTTAAAATACCAAAGAAAACTCCCACACTTTTTGCAGAAAAGAGCAAGAAATAAACTTCTCAACAGCATCGAAGTTCTTGAGTTACTCTCCCTGTCATATGAAATAACAGAGTTCTGGTGTTATTTCATTCATTAAGCTATTCTTCACCTAGACAACAGAACTAAATCACCACATTCTGTCTCTCACAG
Seq C2 exon
GTGAATTTTCACGACAGCTAGAAGAGAAAGATGCTCTGGTGTCTCAGCTATCCCGAGGCAAACAAGCATTTACACAACAGATTGAGGAATTAAAGAGGCAGCTAGAAGAGGAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=PU(11.8=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCTCGAGAAAATGTGCC
R:
CTTAGTCTCCTCTTCTAGCTGCCT
Band lengths:
246-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development