GgaINT0129367 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:386641-387263:-
Coord C1 exon
chr18:387137-387263
Coord A exon
chr18:386760-387136
Coord C2 exon
chr18:386641-386759
Length
377 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTATCTGCGAACTTTCCCAGGTG
3' ss Score
5.8
Exon sequences
Seq C1 exon
GCAAGTCTGGAGAAGACATGCCGAGCATTGGAAGATCAGCTGAGTGAGATTAAGACAAAAGAAGAGGAGCATCAACGGATGATCAATGATGTTAATGCTCAAAGAGCTCGTCTGCAGACAGAATCAG
Seq A exon
GTGAGACTTTCACATTTCTGATATGTCACAGAACAGTGTCAGAGAGTTGAGTCTGTTCCATTTAAAGTAGAGGAGACAAAGAGAGGATCACAGAGAGCAATTTAATCTTCAAGATGGGATTACACCACATGACCTCTGAAAGTTTTTTCCAACCTTAATCATCCTGTGTTTCTGTGATTAACTTAGTGTATAATTTACCTTTCTGGCCATGAGGCCTATCCAACAGAATTGTCTCTCCTATAAGGAGAAATTTATGAATTAATATTATAAGTTTTTGAAAGCTCTGCCAAATATATTGTCTTAAAGTCCAGCCCTAATTGTCCACAACACTGTCATCAGTGACAATTAAAGGCCTGTGTATCTGCGAACTTTCCCAG
Seq C2 exon
GTGAATATTCACGCCAGGTGGAGGAGAAAGATGCTCTGATTTCTCAGCTGTCTAGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGAGGCACTTAGAGGAGGAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(5.6=100),PF0003816=Filament=FE(14.3=100),PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF135141=AAA_27=FE(5.2=100),PF0003816=Filament=PD(4.4=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=PU(12.2=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAAGACATGCCGAGC
R:
TATCTCCTCCTCTAAGTGCCTCT
Band lengths:
238-615
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]