MmuINT0103665 @ mm9
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67112773-67113333:+
Coord C1 exon
chr11:67112773-67112899
Coord A exon
chr11:67112900-67113214
Coord C2 exon
chr11:67113215-67113333
Length
315 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CCCACTTGCGCTGTTCTTAGGTG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGAAATCTGGAGAAGATGTGCCGCACTCTGGAGGACCAGGTGAGTGAACTGAAGAGCAAGGAGGAGGAGCAGCAGCGGCTCATCAACGAGCTGACAGCGCAGAGAGCACGCCTGCAGACAGAAGCAG
Seq A exon
GTAGAGACTCCTTCCCTGGCTCCCCACTTCCTGCATTGCACAAGGGGGTTCTTCCTATGCCGTAATACTCTCATCAAATAGGGAAGTCAGGAGACTGTCAGAACCTTTTGAGGTCGACAACCAAGGTGTGGGGAAGCAAAATTAAATAGAGAAGTTTTTTATGTTCCTGCGGCACCCCTGCTTGCAAGCTACATTTCTGACTTCTTTGTTTGCTAATGTCTATTTCTATAAGAATGGTTAGAAATGAATAGAATATATACACGCACACACAGCGTATTGTTAAACCAAGAGTTCTCCCACTTGCGCTGTTCTTAG
Seq C2 exon
GTGAGTACTCCAGACAGCTGGATGAGAAAGATGCTTTAGTCTCTCAGTTGTCAAGGAGCAAGCAGGCATCCACGCAGCAGATTGAGGAGCTGAAGCGTCAGCTCGAGGAAGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-Myh8:NM_177369:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.875
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(25.8=55.8)
A:
NA
C2:
PF0003816=Filament=PD(4.9=35.0),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(41.9=100),PF0003816=Filament=PU(10.8=77.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCTGGAGAAGATGTGCCG
R:
CTTGGTTTCTTCCTCGAGCTGA
Band lengths:
246-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: