BtaINT0097484 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30039508-30040317:-
Coord C1 exon
chr19:30040191-30040317
Coord A exon
chr19:30039627-30040190
Coord C2 exon
chr19:30039508-30039626
Length
564 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGAG
5' ss Score
3.35
3' ss Seq
TTTACTTCTATAATTCTTAGGTG
3' ss Score
8.46
Exon sequences
Seq C1 exon
GGAAACCTTGAAAAGATGTGCCGCACTCTAGAAGATCAAGTGAGTGAACTTAAGACAAAAGAGGAGGAGCAGCAGCGGCTGATCAACGACCTGACAGCTCAGAGAGCGCGTCTGCAGACGGAAGCCG
Seq A exon
GTAGAGATTTCCCCACAGTCCCACAACTACGTCCTAGAAAAAAGCAATTTTGGGGATTCTGAGTTAATAGCAATACTCTCATATTACAGGGGGGTAAACAAACTACCAAAATTTGCTGACAAGGTCAGGAAAAAAAAAAGCAAGAAATAATCAGCAGTTCTAGTTTATTTGTTACTCTCCGATAGCAATGCTGCTTGTTAATCTCTATTAGCCTTGGACGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTCAGAGTCGGACATGACTGAGCAACTTCACTTTCACTTCTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCTGTCTCAGGGGTCACACAGAATCAGACACGACTGAAGTGACTCAGCAGCAGCAGCAGCAGCAGCCAATTCTATAACAATATTTGAAGTATATATCTGTCAATTTTATGTATAATATATATACAAACCTTTAGGCTTATTTTTTTATGCCACTAGCAAATTCCTTTACTTCTATAATTCTTAG
Seq C2 exon
GTGAATATTCCCGACAACTGGATGAGAAAGATGCTTTGGTCTCTCAGCTTTCAAGGACCAAGCAAGCATCTACTCAGCAGATTGAGGAACTGAAACGTCAGCTAGAGGAAGAAACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702:ENSBTAT00000061119:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.925
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0003816=Filament=PD(4.2=30.0),PF0157614=Myosin_tail_1=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCTTGAAAAGATGTGCCG
R:
TTTAGTTTCTTCCTCTAGCTGACGT
Band lengths:
246-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development