RnoINT0096606 @ rn6
Intron Retention
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53839612-53840185:+
Coord C1 exon
chr10:53839612-53839738
Coord A exon
chr10:53839739-53840066
Coord C2 exon
chr10:53840067-53840185
Length
328 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
CCTGCTTCTGCTGTCCTTAGGAG
3' ss Score
10.59
Exon sequences
Seq C1 exon
GGAAACCTTGAGAAGATGTGCCGCACTCTGGAGGACCAGGTGAGCGAGCTGAAGAGCAAGGAGGAGGAGCAGCAGCGGCTCATCAATGAGCTGACTGCACAGAGAGCACGCCTGCAGACAGAAGCAG
Seq A exon
GTAGACTCCTTCCCGGGCTCCCCTCAGCCTACACTGCACAAAGTGGGTTCTGACTATGCAGTAACACTCTCATTTAAGAGGAAGATCAACAAGCCATCGGAACTTTTCAGAGCAGGCCGTGAAGGTGTGGGGAAGCAAAGTTAAGTAGAGAAATCTGTTACGGAAGCAAAGTTACCACGACACTTGTGCTCACTGAGCTGCATTTCTGACTTTTATTTCTTTTGTTAATGTCCATTTCTATAACAATGCTTAGAGATGAACCGAAATGTATACAAGTGCACACAGCTTAATGCTAAACCATGAGTTCTCCTGCTTCTGCTGTCCTTAG
Seq C2 exon
GAGAGTATTCCCGACAGCTGGATGAGAAAGATGCTTTAGTCTCTCAGTTGTCAAGGAGCAAACAGGCATCCACCCAGCAGATTGAGGAGCTGAAGCGACAGCTCGAGGAAGAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042:ENSRNOT00000057260:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.925
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCTTGAGAAGATGTGCC
R:
CTTGGTTTCTTCCTCGAGCTGT
Band lengths:
246-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]