GgaINT0011718 @ galGal3
Intron Retention
Gene
ENSGALG00000007786 | DOK5
Description
NA
Coordinates
chr20:12219131-12224581:-
Coord C1 exon
chr20:12224446-12224581
Coord A exon
chr20:12219252-12224445
Coord C2 exon
chr20:12219131-12219251
Length
5194 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGG
5' ss Score
8.21
3' ss Seq
ATCCGTTTACTGCTTTGCAGCTT
3' ss Score
7.36
Exon sequences
Seq C1 exon
GATGTGCGACACAGGAGAAGGACTGTTCATCTTTCAGACACGAGATGGGGAAGCAATCTATCAGAAGGTTCACTCGGCTGCTCTGGCCATAGCAGAACAACACGAGCGCCTGTTGCAGAGCGTGAAAAATTCAATG
Seq A exon
GTACGGCTGTGCACTCCGCTGCCTATTTCACATAAGTGAGCAATGCTTCAGTGTGACTTCCTTCTGATTCACAGGCAGTAAGCAGTCTGACTATTGCTCTCAGTAAATTCTTCTCAATTATTATATTTAGGGTAGGGTTTGTAACTGGGATTGCTTTTCAAGGATCCAAACAACAGAGTCCTTGATTTCTGTAGTTGGAGAACCACTGGTGTGATTTAATACAGAGATGATGAGCTCCCACCAACCCATAGTTTCCTTTCTCGTTAACTTCTTCTAATTAGTCACTATCATGAGTTTGTTTAGAAACATTTCTCATCAGTCTATTTGCAGAATGTGGCTCATGCTCAGTTTTTTGTTTGTTCATTGATGCCTATGCTTGAAGGATGATTTGGAAAGGGTTGTATGGTTCCGGTTAACCTGTGGGAGGAAGGACTACATGTTTGTCTGATCTCTTGGTGGATGCCTGTTTTCTACAAGTGCTTTTTGTGTCTAAAACTCATTTTACAGTGCTCATTACCCCTAGAAAATATAGGAGTGTAAGATGCAAAGTTAGCGTACAATCTAAGAACAGATAGTGTGGGATCTCCATGTGCGATGTCAAAAGAAGGCAGTTTGATGGCACTTGCATCTAGCATGTTTCCACATCTTATTGTGTTTGTTTTCTCATGAATCCTGTGGAATGAGAAGGAATCTTCTGTACATCCCGTATCACAGTCAGTCACTACGTTGTAGGGCTCTCAGACTTTCTGGAATGCATAAAATGTGTATAATGAACAACTATGGAGGAGCCTGGCCATATGCAACTTCTCTATTCCAGGCAGTACTAATTGGTTCATGTAATCTACAATGAGAACTATGTCTTTTCCTTTATATGAAAAGTGCTGCTGATACCAAACCATGTCTAATCCTTTCAGTAATTTTAATGATTTCCGGAACTTGAGACAGAATGGAAGCCAAATCCATGATAGGAAGCTATTTCTCTTAACAGTAAAATAAGGAGGATCAATAGAAAAAAATGATTTGCAAGTTTTCTGACCGACTTTGTGTACTAGATAGCTGCTTCAGCCCTACGAGCTGGTGGATGGGTAATTCTGTCATTGCTTGTGGAGCAGGTGAGCAAATGAGTGAGAAAGCACAGAAGACTCAAGTCTGTTTAGGGGTAATGCAGGCCATGTACGTCCGTTTCCAGCAGGGAAGGGGCCAGTTAGCATGGCAGTTTGCACTTGGTGCTACTCAGTTCACTTCTGGCTGGTGTCACTTCAGTAAAGCCATGTCCATGAGGACAAGGACTGACCCAAAGCCTGTCTTGTTCAAGAATGCCCAGAATTCCCTGATTTGAGACAGATGGGAGATGATGTAAGCATGCATCAGTAACTAACTGAAGGAGATTAGAATTAGCCTAGTCTAGGTCAGTCTAAGTAGCAACCATTTGTAGCACACCAGCATCAGATGGGACTGAGCAGCCTGGCAAGAGCATGAATTCAGTTCAGGAAAAAAAAAAAAAACCCAGCCAAAAGGCAATTATTCATTAGCTTATACCTCCTGAAGTGAGTAGGTTTTCAGGCTATTTCATATTAGTGGTTTTACATTCATGTAATAGCATCTTTAATATGCGGTGTCTGATGGTATGCTGTAAAATTTCTGTTTTACAAGCGCCCATGCACTCAACAGATGCACAATTGTTATAGATTTCAATAGAGAGCAGCTGTACAACCTCAAAAGCTTTTTCATGAACACTGTGTCCAACCACAACCCCTAAATCAAGTTTTATAGACCCGAGAGCACTAAACAGGAAATAAGAACATATTCCTGTCGAACTGAAAGCCTTGTAATTTAAGATCTGAATATAATTGCTTCAGACAAGTCCATATGCCCCTGAATACAAGCCTCCCAAGTCTGTCATAGAGATGTCTGGTCCCAAAATAGTCACACTTAGTCCCTTCTCTCGGTTTCAAGGATGCTCAGATTTAGGAGTTTAGACAGAAGATTGTTACGTTAATGTAGAGATCAGATGGCTGCTTTTGCTGATCACAGGATACCTTGTGAGGGTCATCCTTGTTGTTCAGGTTGATTGATTTCCCTGGTACTTCAATTCTGCTTGAACACTTCCAAGGGGAGTTTATATGGTGGCTTGCACTTCATGCCCAGCGGTCTGAGCTGCATTAGATTGTTTCTGTCTCCAAGAATTATTAACTCCATGTGATTTTTTTTTTTTTTTATATTAGTGAAGCTAGAGCTACTATTTACAGAAAAGATAAATAAGAGATGGGTGACACTGGTGGCAAGACATGAAGTCTGCTCTGAGTGGCTTCTGCTTTCCCCTGGCCACTGCTACATCAGTGAGGTGAGCATAGGAGACAGGGCTGTGGTGCTGAGCACCTGAGAGCTCCTGGGGTCTGAATAGTAAAGGGGAGTTGGATGTCCCAGGCTGGCGGAGCAAATGGAGCTGCTGAGTACTGCTGAGAGTGTGGGCTGCGATGTCTGACACCTCCCCAGCAGCCTCGTGCTCCATAGCTCAGTGTGTTGGTGCAGTGTGGCTGTATGCCTATGGGTGCTGCAAGGCTTGTAGGAATGAGCGTGGTGGGCTTCCTCAGCCAGAGCCTCACCCTGACAGCTGTGGTGTGTGATGGCGTTCTGGTGAGGTCTGATGTGCTGAGCAGGGTCTGACACGCATTCACAATGGGCTTCGGTTATTTTGTTTTCCAGTGAATTAAAAAATCTCTTTTTTAAAGAGAGGAAAGAGCAAACTCTGCTTAGCGATGCATGAAGCTGTTCTGGTCAGTGGCAATTCACCTTGTCCAGCTGCTCCTTTTCTGCATTGCCAGACAAAGAAATGAAAATCCCTATTCAAATTGCGGGCATATTTTCATGACCATTTGATTGCCATGAAAACTGACCGGAGCAGTGTTGTGACTTGACTGCTGTCATCAATGCCTGCTCTCAGTCAAAGTGCTTTAGAAAAGGACATTACAACCTGATGTCTTGCTGAGAAATAACAACAGTGAGCTGCTCCATTCTGCCTGCTGAAGCCTGGTGCTCCAGAGGGGGATATTTGCAGACAGTTTGTCCATAGTAGGGCTGACTCCTCCTGGTTCTGCAGCTCAGGTGTGCTTCTGTGCCGGCCCCACTGGGGTATGTGTGTGGCTGGGTTATGGCCTGGTGTCGTCTCTGAGCATTTCCATAGAGGTTCATAACTAGGAGGGGAAATGGTAAGATAGATAGGAAAAGAAAACGAGTCGAAACAGCAGCCATGTCTTAATGCCCTTTCATTTCTGACATTTACTTTTATTAATAGTTACCATTCTGTAGCTTTGTTCTATTGAATTTGGCAAGTGCTACTTAAGCAATTGTTCTAATGAATTTTGATTATATGGATTTGCTTCACTGGGAAGAAAATCCCCTCCAAAACACAGTGATCCTCTGCAACTGGAGGTCCCAAGACAAAGGTTTCTGTAACACAGGTTATTTTAAACAGGTGCATTCTGCAAAACCTTGGCGAATTGCACTGTTCAGCCTGAAAGAACCCATCTAACCTGGTACATCTTAAATTATCTTTCTTTTCTTTCCTTTTGGAGCAACTTTCAAAGCTAACTTGGAAGAATCTTTCCCTTAAGTAGGCAGTGGTTTTGCCTCTTGTGCTAGTTTTGCTGATTGCTAAGAGGAGAGTGAGAGGCTGTAGATTAGGTGCCCTCCAATTAACAAGTTATTAATTATATTAATGGTATTTAGAGTTGTGTGTCTTGCTTGGTCCTCTGCTTGTAGCCACTGCCTATGTGTGCTCCAGCACGGAGTTCTGGCTGGCTTTGACCTGCTTATGGTGCTGGGTGCCTCTGTGGAATAAAGCCAGGCCATCAGCAAGCTATTCCTGCTTCCTTGGTTGCCACGGAGGTACAGTGGACTAATTGTGAGAATGAAATCAGTCATTACCGCTGCTTTTGCTCACAGTCTGAGGTGTTTTGATGAAGTCTTATGTATTCAGGACATAACATACTAATTCTTTTCCCCAGCTGTGGGTTTTCTAATTCTTTCCCATGCTGATTGAGTTCAGGTCAGGCAGCTCTTCTGGCCCTTCTATGTCTTTATCTTCTTTCTCTGGCAGTGTCTTTTTCTCCATTGATACCCTCCTGGGTGTTGCTGTCCTTCTGGCTGCTGGGCTGTGCCTCAAACTGCCTGAGCTTGCTGCCCAGCTCACCCAGGAGTGCACCATCCTGGAAGTGCCATCAGTGAGGAAGCACATCTTGCTCCGGCTGTGGGCCCCTCATTGTTTGTTTCCATGGAGCTGTTGTGTGTGATGACACCACAAGTGATGTTGGGGCTTCAGTGATGGAGCTGTGATAAATACTCTTTGCAGCGGAGGTGGCAGCTCATGTTGTGCAGTGACTCACACCCTGCCGACATGGGGGTGGGTGTTCTAAGAGCAAAGGTTGATCTGGGTTTGCTTTTGTTTTTGTTTTGTTTTCCCTTGACGTTGCAGGCACAGCATCCACCATACAGAGGGAGTTTGAGGGTTCTGCCCCCTCTAAAGAACTTCAAAATGGCTCTTCAATAACAGGCAGCTCTCTTGTAAGAGGTTCTGTCACCTCAGGTTTTGTGAAACTATAATGTAAGAGCTTGTTCTTTTTCTGAAAAGTATTTTTATAAGTAGAAAAGATCAAGTACAAGTTTGGTATCTTCAAACTAATGTTTTTCTGAGCTTTGGAAAAAGAATTTCAGCTGTACTGTGAAGTTTATGATAGAACCCAGATATTATCATCAGCCGGCATATGTGTATTATTGAATTCATGTGAAACGTGTCTAATCAGGTTCTGAGGTTATACATAGCTTTGGGAAGCTGCTTACCTAGTTGCTACGTAGCTGTCATAGGAGGAGCATGTTCCTGCCTCCCACTGAACCTCAGTTTCTGTTTCAGCTGCTTGAGTTAGACCTCCCCGCAGGGGCAGCGGTGCTGGCACAGGAGCAGGGCAGCACGAAGGTGAGCTCCGGTGTGCAAAGCAGCGTGACCTCCTAACGTGTGGTGTGTGCCCCCAGCCTAACCCCGAGTCAGTCCCTGCTGGCTGCAGGGTGGGCAGATGGACAGAGGGAGACGCTGTGCTGAAATGCCATTAGAAATCTTTTCAGGCAGCGGTTGCGCTATTTCCCCGAGGACCTTCAGTGTGCACAACTGCCTCCTTCATATCCGTTTACTGCTTTGCAG
Seq C2 exon
CTTCAGATGAAGATGAGCGAGAGAGCAGTGTCCCTCAGCACCATGGTGCCCCTGCCCCGCAGTGCCTACTGGCAGCACATCACACGGCAGCACAGCACCGGCCAGCTCTATGGCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007786:ENSGALT00000012627:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0217412=IRS=PD(32.7=69.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]