GgaINT0012758 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15236711-15237067:-
Coord C1 exon
chr14:15236940-15237067
Coord A exon
chr14:15236811-15236939
Coord C2 exon
chr14:15236711-15236810
Length
129 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TATCTGAATTTTTCTCCTAGGTA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GATAACCCAGAGAAAACTGCTGCCTGCATGACTGGAAACTTTTACGTCACTGGAGACAGAGGGATTATGGATGAAGAAGGATATGTCTGGTTTGTTGGAAGAGCTGATGATATAATTAATTCTGCTGG
Seq A exon
GTAAGTCGGCTGCTTTTAGATTCCATTGTTTGCCTGTTAGTGACCTGTTTTTATCAAAAAAATTCAATCTGAAAAAAATAGTGAAATGACAAGCTTGCTGTGGTTGTCATATCTGAATTTTTCTCCTAG
Seq C2 exon
GTATCGTATTGGTCCATTTGAAGTTGAAAGTGCATTAATACAACACCCGGCAGTCTCAGAGTCAGCTGTTGTCAGCAGTCCTGATCCAATTCGAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961:ENSGALT00000003035:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
NA
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCCAGAGAAAACTGCTGCC
R:
CTCCCCTCGAATTGGATCAGG
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]